Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g2080 ATGTTAGGAATCCATGATAAAGGGTTACCATTACTTTACATTGAAGTTTGTTCATCTCCCAAAGAAATCTCAAAATTCATCCACTCAAATACCCCAATTGCATTTATCTGTTCTCAATCCACCAACTGCATTGGAACACCCTTTTCTCCTTCAATGGAAGGTGAGGAGGGGAAACAGTCTTCCCAAAAAAACCCTTACGTTGAACTAGAAGAAGTTGACTTTGATTTTATTCTAGCAATGAGCATGCAAGAACAAGAGAGAGAGTTCACAATGCTTTCAACTATTGAAAGTGAAAGTGATGAATATCTAAGTGACTCCTCTATAGATAATGATGATGATGGTGATCCTGACTTTATAGCGAGTCAAGAGTTTGAAACCGACCTTCGGTTTCTTGAAGGTGAAGGAAGCGACGATGATGATGAAGACATGGAAATGGAAGAAGATGAGATTGATCCAGACGAATTATCTTATGAAGAATTGATGGAGTTGGAAGAGTTTATAGGAGAAGAAACAAGAGGGTTATCAGCAAATGAAATCTCTTTGTGCTTGTACCCTTATACCTGCCAATGTGCTGAAAGCAAAAGTGGCATTGATCGTTGTGTGATTTGTCAGGTTGAATATGAAGAAGGTGAAGCACTAGTGGCACTTCAATGTGAGCACCCTTATCATTCAGATTGCATAAGAAAGTGGCTTCAAATTAAGAAGGTTTGTCCAATTTGTGGAAATGAAGTTTCAACTCCCAACTTGGCTTCGAACCCTTAG 762 0.3871 MLGIHDKGLPLLYIEVCSSPKEISKFIHSNTPIAFICSQSTNCIGTPFSPSMEGEEGKQSSQKNPYVELEEVDFDFILAMSMQEQEREFTMLSTIESESDEYLSDSSIDNDDDGDPDFIASQEFETDLRFLEGEGSDDDDEDMEMEEDEIDPDELSYEELMELEEFIGEETRGLSANEISLCLYPYTCQCAESKSGIDRCVICQVEYEEGEALVALQCEHPYHSDCIRKWLQIKKVCPICGNEVSTPNLASNP* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g2080 253 SMART ring_2 200 240 IPR001841 -
Gso4g2080 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 248 IPR013083 -
Gso4g2080 253 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 52 249 IPR045191 GO:0061630
Gso4g2080 253 SUPERFAMILY RING/U-box 161 247 - -
Gso4g2080 253 ProSiteProfiles Zinc finger RING-type profile. 200 240 IPR001841 -
Gso4g2080 253 Pfam Ring finger domain 199 240 IPR001841 -
Gso4g2080 253 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED-LIKE 52 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g2080 Gso-Chr4 51233780 51234803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g2080 147 244 C3H Transcription Factor Family AT3G63530 48.515 1.98e-26 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g2080 K19045 - gmx:100526881 351.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g2080 4 51233780 51234803 Gso14g1207 14 28393795 28395405 PCT
Gso4g2080 4 51233780 51234803 Gso13g0155 13 10132048 10133124 PCT