Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g2079 ATGGCATCGGAGCTTCAATTGCCCCCAGGCTTCAGATTCCATCCAACGGACCAGGAGCTGGTGTTGCACTATCTCTGCCGTAAATGCGCATCGCAGCCTATCGCCGTTCCCATCATCGCCGAAATCGACCTCTACAAATACGACCCCTGGGACCTACCCGGATTGGCTTCCTACGGAGAGAAAGAGTGGTACTTCTTTTCACCACGGGACCGGAAATACCCGAACGGTTCCAGGCCGAACCGGGCGGCGGGAACCGGTTACTGGAAGGCAACCGGGGCGGATAAGCCCATTGGCCACCCCAAACCGGTTGGGATAAAAAAAGCTTTGGTGTTTTACGCAGGGAAAGCTCCGAAAGGGGACAAGAGCAATTGGATCATGCACGAGTATCGTCTCGCCGATGTAGATCGCTCCGTTCGTAAAAAGAACAGCCTAAGGTTAGATGATTGGGTGCTTTGCCGTATTTACAACAAGAAGGGCACGATCGAGAAGTTCCAACCAAGCAGCGATGTTGTTGTTAGCCGAAAAATGGAATCATCGGAGATCGAAGACAGGAAGCCGGAGATTCTGAAAAGCGGAGGAGGTTGTCTTCTGCCGCCGGTTCCGCCGCCGCAATCGAAGGCGGCGGCGAAGACGGATTACATGTACTTCGACCCGTCGGATTCAATCCCGAAGCTGCACACGGACTCGAGCTGTTCGGAGCACGTGGTATCGCCGGAATTCGCGAGCGAGGTGCAGAGCGAGCCAAAGTGGAAGGAGTGGGAGAAAAGCCTCGAGTTTCCGTTTAATTACGTGGATGCCACTCTGAACAACAGCAACAGCTTCACGACGCAATTCCAGGGCAATAATCAGATGATGTCGCCGCTGCAGGACATGTTCATGTACTGGCCCAACAAGCCCTTCTGA 903 0.5404 MASELQLPPGFRFHPTDQELVLHYLCRKCASQPIAVPIIAEIDLYKYDPWDLPGLASYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGHPKPVGIKKALVFYAGKAPKGDKSNWIMHEYRLADVDRSVRKKNSLRLDDWVLCRIYNKKGTIEKFQPSSDVVVSRKMESSEIEDRKPEILKSGGGCLLPPVPPPQSKAAAKTDYMYFDPSDSIPKLHTDSSCSEHVVSPEFASEVQSEPKWKEWEKSLEFPFNYVDATLNNSNSFTTQFQGNNQMMSPLQDMFMYWPNKPF* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g2079 300 PANTHER NAC TRANSCRIPTION FACTOR 56 2 274 - -
Gso4g2079 300 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Gso4g2079 300 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Gso4g2079 300 PANTHER NAC DOMAIN-CONTAINING PROTEIN 2-LIKE 2 274 - -
Gso4g2079 300 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
Gso4g2079 300 Gene3D NAC domain 16 161 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g2079 Gso-Chr4 51225802 51227813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g2079 1 294 NAC Transcription Factor Family AT1G01720 69.967 1.56e-146 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso4g2079 NAM 2.3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g2079 - - gmx:100805768 623.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g2079 4 51225802 51227813 Gso6g1327 6 13010014 13011862 GST