Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g2078 ATGCAAATTTCAGTTCTCAACAACGCACTGAACGAAGAAAGTGCGTATTATCACCGTGACCTAACAATGGCGGAGACGAACCATCATATGGACATCGACAGCGACGACCACACTTACACCGCGAGGCCCGACAAAGCTAAAAGTGTCGTCGTCGCCAGCAACCCTCCCGCCGCCGGCAAGGCCATTCCGTGGGTCGAAAAATATCGCCCTCTGTCCCTCGACGACGTCGCCGCTCATCGTGACATTGTCGATACCATTGATCGGCTGACCACTGAGAACAGATTGCCCCATCTTCTGTTGTATGGCCCTCCTGGCACGGGCAAAACATCAACGATTCTCGCTGTGGCACGCAAACTATATGGTTCACAGTACCAAAATATGATTTTGGAGCTCAATGCATCAGATGATAGAGGAATTGATGTCGTGCGACAGCAGATTCAAGATTTTGCTAGCACTCAGAGCTTATCATTTGGTGTCAAGTCCTCTGTAAAACTTGTATTGTTGGATGAAGCAGATGCCATGACAAAGGATGCCCAATTTGCATTACGTAGAGTGATTGAGAAATATACAAAAAGCACTAGGTTTGCACTTATCTGTAATCATGTAAACAAGATTATTCCTGCACTTCAATCAAGATGCACTCGGTTTCGGTTTGCCCCTCTTGATGCCGTCCATGTCACTGAAAGACTGAAACATGTTATTAAGGCTGAAGGGCTTGATGTTGAAGACAGTGGCTTAGCAGCTCTTGTTCGGCTTAGCAATGGTGATATGAGAAAGGCTTTGAATATTCTTCAGTCAACACATATGGCTTCTCAGCAGATAACAGAAGAAACTGTTTACCTGTGCACTGGAAATCCATTGCCCAAAGACATTGAGCAAATATCTTACTGGCTTCTAAATGAACAATTTGCAGATAGCTTTAAAAGAATAGATGAAATGAAGACAAGGAAAGGGTTGGCCCTGGTTGATATTGTCAGAGAAGTGACATTGTTTGTTTTTAAGATTAAGATGCCTTCAGCTGTTCGAGTACAGTTGATGAATGATTTAGCGGATATAGAGTACAGATTAAGTTTTGGGTGCAACGATAAGCTTCAGCTCGGATCGGTTATTGCTTCTTTTTCACGTGCTAGATCTGCACTGGTTGCGGCTGCTACATAG 1158 0.443 MQISVLNNALNEESAYYHRDLTMAETNHHMDIDSDDHTYTARPDKAKSVVVASNPPAAGKAIPWVEKYRPLSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGSQYQNMILELNASDDRGIDVVRQQIQDFASTQSLSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVIKAEGLDVEDSGLAALVRLSNGDMRKALNILQSTHMASQQITEETVYLCTGNPLPKDIEQISYWLLNEQFADSFKRIDEMKTRKGLALVDIVREVTLFVFKIKMPSAVRVQLMNDLADIEYRLSFGCNDKLQLGSVIASFSRARSALVAAAT* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g2078 385 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 54 381 - -
Gso4g2078 385 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 280 IPR027417 -
Gso4g2078 385 SMART AAA_5 94 224 IPR003593 -
Gso4g2078 385 PANTHER REPLICATION FACTOR C SUBUNIT 5 54 381 - -
Gso4g2078 385 Gene3D - 57 220 IPR027417 -
Gso4g2078 385 Gene3D - 286 383 - -
Gso4g2078 385 Gene3D - 224 285 - -
Gso4g2078 385 Pfam Replication factor C C-terminal domain 286 372 IPR013748 -
Gso4g2078 385 Pfam ATPase family associated with various cellular activities (AAA) 98 218 IPR003959 GO:0005524|GO:0016887
Gso4g2078 385 CDD AAA 82 220 - -
Gso4g2078 385 CDD HLD_clamp_RFC 221 283 - -
Gso4g2078 385 SUPERFAMILY post-AAA+ oligomerization domain-like 286 376 IPR008921 GO:0003677|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g2078 Gso-Chr4 51216074 51222894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g2078 23 384 Core DNA Replication Machinery Family AT1G77470 78.378 0.0 587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g2078 K10756 - gmx:100805231 706.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g2078 4 51216074 51222894 Gso6g0969 6 9321229 9329019 GST