Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g2061 ATGGCGCCAATCCTGCAGAGCACTCAGCCATGGGTCGAGAAATACCGGCCAAAGCAAGTGAAAGATGTTGCCCACCAAGATGAAGTTGTTCGAGTACTGACAAACACCCTTGAAACTGGAAGTTGTCCCCACATGCTCTTCTATGGTCCTCCCGGCACAGGAAAAACAACGACTGCCCTTGCAATTGCCCATCAGCTTTTTGGACCTGAACTCTATAAGTCTAGGGTGCTGGAGCTGAATGCAAGTGATGATAGAGGGATTAATGTTGTTCGAACAAAGATAAAAGATTTTGCTGCTGTTGCTGTTGGTACTAATCAGCGTAAAAGTGGTTATCCTTGTCCACCATTTAAGATTATTGTTCTAGACGAGGCAGATTCAATGACTGAAGATGCTCAGAATGCCCTGAGGCGTACAATGGAAACTTACTCTAAAGTTACAAGGTTCTTTTTTATATGCAACTATGTTAGCAGGATTATAGAACCACTTGCTTCAAGGTGTGCAAAATTCAGGTTCAAACCATTATCAGAAGAAATCATGAGCAGCCGGATATTATACATCTCCCAAGAAGAGGGACTCTGTCTTGATGCTGAGGCTCTTTCAACCCTGAGTTCTATTTCTCATGGAGATCTTCGTCGGGCAATCACATACTTGCAGTCTGCAGCTCGCTTATTTGGATCTTCAATTTCTTCAGAGAATCTGATTTCTGTGTCTGGGGTTGTTCCGGCAAAGGTTGTGGAGGAACTTCTTAAAGCTTGCAAAAGTGGTAATTTTGATTTGGCAAACAAGGAAGTCAACAATTTCATTGCAGAGGGATATCCAGCTTCTCAGATGCTTACTCAGTTATTTGAGTCCATTGTTGAAGACAATGACTTATCTGATGAGCAAAAAGCAAGAATATCCAAGAAGCTGGGTGAAGCTGATAAGTGCTTAGTTGACGGTGCTGATGAATACTTACAACTTCTTGATGTGGTCAGCAATACAATGAAAGCTTTTAGCAACATGCCAGAAGCATTTGCTTACAAATGTTAG 1029 0.4218 MAPILQSTQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNQRKSGYPCPPFKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMSSRILYISQEEGLCLDAEALSTLSSISHGDLRRAITYLQSAARLFGSSISSENLISVSGVVPAKVVEELLKACKSGNFDLANKEVNNFIAEGYPASQMLTQLFESIVEDNDLSDEQKARISKKLGEADKCLVDGADEYLQLLDVVSNTMKAFSNMPEAFAYKC* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g2061 342 PANTHER REPLICATION FACTOR C SUBUNIT 4 7 330 - -
Gso4g2061 342 SMART AAA_5 41 190 IPR003593 -
Gso4g2061 342 Pfam ATPase family associated with various cellular activities (AAA) 45 172 IPR003959 GO:0005524|GO:0016887
Gso4g2061 342 SUPERFAMILY post-AAA+ oligomerization domain-like 240 325 IPR008921 GO:0003677|GO:0006260
Gso4g2061 342 CDD HLD_clamp_RFC 174 233 - -
Gso4g2061 342 Gene3D - 240 329 - -
Gso4g2061 342 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 7 330 - -
Gso4g2061 342 Gene3D - 176 239 - -
Gso4g2061 342 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 232 IPR027417 -
Gso4g2061 342 Pfam Replication factor C C-terminal domain 241 325 IPR013748 -
Gso4g2061 342 Gene3D - 3 173 IPR027417 -
Gso4g2061 342 CDD AAA 26 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g2061 Gso-Chr4 51050016 51056405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g2061 1 338 Core DNA Replication Machinery Family AT1G21690 78.761 0.0 556
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g2061 K10755 - gmx:100798331 669.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g2061 4 51050016 51056405 Gso4g2061 4 51050016 51056405 ECH
Gso4g2061 4 51050016 51056405 Gso6g0985 6 9500010 9505875 GST