Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g2060 ATGTCGACCCAGAATCGTCGCTCGTCGTTTTCCTCCTCAACGACGTCGTCTTTGGCCAAACGCCATGCATCCGCCTCAACGACGTCGTCTTTGGCCGCCGCTCCTACAAACATGGCCAAGAAGCGGCCTCCTCTCTCCAACCTCACCAACACCGTTGCTCACCGCAACTCTTCCTCTTCGGTTCCATGCGCAGCTAAATTTGCCAAGACCAAGAAAGACGTTGTTCCGGCGTGTTCAGGGAACAAAAGGCCCACATTGGCGAATGTGAAACCCGCTAGCGCAGTTATTTTTCCGAAGGCTAATTCTTTCCCTGTAAAGAATGAAGCTCCACCAACTCCTCCTCCTCCAGTTGCCACCGTTACTGTTCCGGCTCCGGTGGTGGATGTTTCACCTAGTAAATCAGATACAATGTCCGTTTCTACGGATGAGTCAATGTCCTCTTGTGACTCCTTCAAGAGCCCTGACATTGAATATGTGGACAATAGTGATGTTGCAGCCGTTGATTCAATTGAGAGGAAAACATTCAGCCATCTCAACATCTCTGATTCTACAGAAGGGAACATATGTAGTAGAGAGATACTTGTTGAGTTGGAGAAGGGGGACAAATTTGTCAATGTTGATAATAATTACGCGGATCCTCAGCTCTGTGCAACCTTTGCTTGTGATATCTACAAGCACCTTCGTGCATCTGAGGCAAAGAAAAGGCCTTCCACAGACTTCATGGAGAAAATTCAGAAGGAGATAAACTCCAGCATGCGTGCTATATTGATTGACTGGCTTGTCGAGGTGGCTGAAGAGTATAGACTAGTACCTGATACATTGTATTTGACAGTAAACTACATTGATCGGTATCTATCAGGGAATGTGATGAACAGACAAAGGTTACAGTTACTTGGTGTTGCCTCCATGATGATTGCCTCTAAATACGAGGAAATTTGTGCACCTCAGGTGGAGGAATTTTGTTACATAACTGATAACACATACTTCAAAGAAGAGGTTTTGCAGATGGAATCTGCTGTCCTGAATTTTCTCAAGTTCGAAATGACAGCCCCAACAGTAAAATGTTTCTTAAGAAGATTTGTTCGTGCAGCTCAAGGAGTTGATGAGGTCCCTTCGCTACAACTAGAGTGCTTGACAAACTATATTGCTGAATTGTCTCTCATGGAGTACAGTATGCTTGGTTATGCTCCATCACTTGTAGCCGCTTCAGCAATTTTCCTGGCCAAATTCATACTTTTCCCTTCAAAGAAACCATGGAATTCCACATTACAGCATTACACCTTGTACCAGCCTTCTGATCTGTGTGTCTGCGTAAAGGATCTTCACCGTCTTTGTTGCAACAGCCCTAATTCTAATTTGCCTGCAATTAGGGAGAAATACAGTCAGCACAAGTACAAATATGTGGCCAAGAAGTACTGCCCTCCTTCAATACCCCCAGAATTTTTTCAGAATTGA 1455 0.4474 MSTQNRRSSFSSSTTSSLAKRHASASTTSSLAAAPTNMAKKRPPLSNLTNTVAHRNSSSSVPCAAKFAKTKKDVVPACSGNKRPTLANVKPASAVIFPKANSFPVKNEAPPTPPPPVATVTVPAPVVDVSPSKSDTMSVSTDESMSSCDSFKSPDIEYVDNSDVAAVDSIERKTFSHLNISDSTEGNICSREILVELEKGDKFVNVDNNYADPQLCATFACDIYKHLRASEAKKRPSTDFMEKIQKEINSSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNVMNRQRLQLLGVASMMIASKYEEICAPQVEEFCYITDNTYFKEEVLQMESAVLNFLKFEMTAPTVKCFLRRFVRAAQGVDEVPSLQLECLTNYIAELSLMEYSMLGYAPSLVAASAIFLAKFILFPSKKPWNSTLQHYTLYQPSDLCVCVKDLHRLCCNSPNSNLPAIREKYSQHKYKYVAKKYCPPSIPPEFFQN* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g2060 484 MobiDBLite consensus disorder prediction 1 35 - -
Gso4g2060 484 MobiDBLite consensus disorder prediction 129 148 - -
Gso4g2060 484 SUPERFAMILY Cyclin-like 351 476 IPR036915 -
Gso4g2060 484 MobiDBLite consensus disorder prediction 1 62 - -
Gso4g2060 484 CDD CYCLIN 252 341 IPR013763 -
Gso4g2060 484 ProSitePatterns Cyclins signature. 253 284 IPR006671 -
Gso4g2060 484 Gene3D - 222 470 - -
Gso4g2060 484 SMART Cyclin_C_2 351 474 IPR004367 -
Gso4g2060 484 SMART cyclin_7 258 342 IPR013763 -
Gso4g2060 484 SMART cyclin_7 355 443 IPR013763 -
Gso4g2060 484 PIRSF Cyclin_A_B_D_E 1 480 IPR039361 -
Gso4g2060 484 MobiDBLite consensus disorder prediction 42 62 - -
Gso4g2060 484 Gene3D - 236 349 - -
Gso4g2060 484 SUPERFAMILY Cyclin-like 211 348 IPR036915 -
Gso4g2060 484 Pfam Cyclin, N-terminal domain 222 348 IPR006671 -
Gso4g2060 484 CDD CYCLIN 349 442 IPR013763 -
Gso4g2060 484 Pfam Cyclin, C-terminal domain 351 470 IPR004367 -
Gso4g2060 484 PANTHER CYCLIN-A1-1 30 483 - -
Gso4g2060 484 MobiDBLite consensus disorder prediction 131 148 - -
Gso4g2060 484 PANTHER CYCLINS 30 483 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g2060 Gso-Chr4 51043780 51046905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g2060 4 484 Core Cell Cycle Gene Families AT1G44110 62.834 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g2060 K06627 - gmx:547781 906.746
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g2060 4 51043780 51046905 Gso4g2060 4 51043780 51046905 ECH
Gso4g2060 4 51043780 51046905 Gso6g0986 6 9511066 9514206 GST
Gso13g0159 13 10185625 10190399 Gso4g2060 4 51043780 51046905 PCT
Gso4g2060 4 51043780 51046905 Gso13g0159 13 10185625 10190399 PCT