Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g2027 ATGGAGGATTCTTCAGCTGGTGAAGACACCAGGACTTGTCCCCGTGGCCACTGGAGACCCGCTGAGGATGAAAAACTTAGACAACTTGTTGAACAATATGGTGCCCAAAACTGGAATTCAATCGCTGAAAAGCTCCAAGGAAGATCAGGGAAAAGTTGCAGATTAAGGTGGTTCAATCAGCTTGATCCAAGAATCAACCGAAGGCCATTCACGGAAGAGGAAGAAGAGAGGTTACTCGCGGCTCATCGCATTCACGGGAACAAGTGGGCACTCATAGCGAGACTTTTCCCCGGTCGAACCGATAATGCTGTGAAGAACCACTGGCACGTTATAATGGCGAGAAAACAAAGGGAACAGTCCAAGCTATGTGGGAAGAGAAGCTTCCAAGACGTTTACAACGATTCCAACAACACGTTCCTCGAAAAAAGAACAACACCACAATCTCATCATCAAGACATGTTGTTTAGTACTACGAGATTTGGGTTAGAGAATGGAAGATTCTTTGACTTTCGAAGCCTCGATAACAATAAGGATGATGATAATAATTATAGGATAGTGTCAGATACTACCTCTAGTACTTCTCTGGCGTCTTGGAATTTTGCTTCTGTGCCAACCACCACCTCCACCACCACAAAAGGCGCGAGAGACTATTTCAACACTTCTCGTTCTTCTAGTGTTTATCTCTCAGAGTGTTCCAGAAGCTCAGATAGATCGTTTCTTTACAGAATTTATCCAAATCCCGCATTCTCTCTTCCCAACTACAAGAGAGTTGTTCCAACAAGTCCTTTTAGAACTTTCCTTGGTTCTTCTGATCATCATGATGGAAGGATCATAAAGAGGGACTTGATGAGTTTCTGTGATAATAATAATAATAACTCATCATCCACATTCAGCAAGTTGAAGGCTTCCACGGAGAAAGATCATCAACAACAACAAACAAATGAAGATGAGACCAATGTCGAGCCCAAAGAAGTTCCTTTCATTGATTTTCTTGGTGTTGGTGTCTCTTCATCATAA 1017 0.4267 MEDSSAGEDTRTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRSFQDVYNDSNNTFLEKRTTPQSHHQDMLFSTTRFGLENGRFFDFRSLDNNKDDDNNYRIVSDTTSSTSLASWNFASVPTTTSTTTKGARDYFNTSRSSSVYLSECSRSSDRSFLYRIYPNPAFSLPNYKRVVPTSPFRTFLGSSDHHDGRIIKRDLMSFCDNNNNNSSSTFSKLKASTEKDHQQQQTNEDETNVEPKEVPFIDFLGVGVSSS* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g2027 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso4g2027 338 ProSiteProfiles Myb-like domain profile. 15 61 IPR001005 -
Gso4g2027 338 MobiDBLite consensus disorder prediction 1 20 - -
Gso4g2027 338 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso4g2027 338 SUPERFAMILY Homeodomain-like 14 108 IPR009057 -
Gso4g2027 338 Pfam Myb-like DNA-binding domain 18 78 - -
Gso4g2027 338 MobiDBLite consensus disorder prediction 301 323 - -
Gso4g2027 338 Gene3D - 68 139 - -
Gso4g2027 338 PANTHER MYB PROTEIN-RELATED 6 336 - -
Gso4g2027 338 MobiDBLite consensus disorder prediction 296 325 - -
Gso4g2027 338 PANTHER TRANSCRIPTION FACTOR MYB56 6 336 - -
Gso4g2027 338 CDD SANT 18 59 IPR001005 -
Gso4g2027 338 SMART sant 66 114 IPR001005 -
Gso4g2027 338 SMART sant 14 63 IPR001005 -
Gso4g2027 338 CDD SANT 69 109 IPR001005 -
Gso4g2027 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 61 IPR017930 -
Gso4g2027 338 Gene3D - 15 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g2027 Gso-Chr4 50644897 50646717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g2027 13 122 MYB Transcription Factor Family AT1G17950 84.545 1.17e-67 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso4g2027 Myb_DNA-bind_6 2.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g2027 K09422 - gmx:100817328 666.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g2027 4 50644897 50646717 Gso4g2027 4 50644897 50646717 ECH
Gso4g2027 4 50644897 50646717 Gso14g1277 14 34136060 34138366 PCT