Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g2018 ATGTCGAGCACAGCTGGCCAAGTCATCAAATGCAAAGCTGCGGTTTCATGGGAGGCAGGGAAGCCACTTGTGATTGAAGAAGTAGAGGTTGCGCCACCACAAGCTGGTGAAGTGCGTTTGAAGATCCTCTACACCTCTCTTTGCCACACTGATGTTTACTTCTGGGAAGCTAAGGGCCAAACTCCATTGTTTCCTCGTATATTTGGTCATGAAGCTGGAGGGATTGTGGAGAGCGTAGGTGAGGGTGTGACTCATCTGAAACCAGGGGACCATGCCCTCCCTGTGTTTACCGGGGAGTGTGGGGACTGCCCTCATTGCAAGTCAGAGGAGAGCAACATGTGTGATCTTCTCAGGATCAACACTGATAGGGGTGTCATGATCCATGATAGCCAAACAAGGTTTTCTATAAAGGGACAACCTATTTACCATTTTGTTGGTACCTCTACATTCAGTGAATACACTGTTGTTCATGCTGGATGTGTTGCCAAAGTCAACCCTGCTGCCCCACTTGACAAAATCTGTGTTCTCAGTTGTGGAATTTGCACAGGTCTTGGGGCCACTATCAATGTTGCAAAACCAAAACCTGGTTCTTCTGTTGCCATTTTTGGACTTGGAGCTGTTGGCCTTGCCGCTGCTGAAGGGGCAAGGATTTCTGGTGCATCAAGAATCATTGGGGTTGATTTAGTTTCTAGCAGATTTGAAGAAGCTAAGAAGTTTGGGGTCAATGAATTTGTGAACCCAAAAGATCATGACAAACCTGTACAAGAGGTGATTGCTGCAATGACAAATGGGGGTGTGGATCGTGCTGTTGAATGTACTGGCAGCATCCAAGCCATGATCTCAGCATTCGAATGCGTCCACGATGGTTGGGGTGTTGCTGTACTTGTTGGAGTGCCAAACAAAGATGATGCATTCAAAACTCATCCAGTGAATTTCTTGAATGAGAGGACTCTAAAGGGTACCTTCTATGGAAACTACAAACCCCGCACTGACCTTCCTTCTGTTGTGGAGAAGTACATGAATGGGGAATTGGAACTGGAGAAATTCATCACTCACACAGTTCCATTCTCTGAGATTAACAAGGCTTTTGATTACATGCTGAAAGGGGAGTCCATCAGATGCATCATTCGTATGGGGGAGTAA 1143 0.4637 MSSTAGQVIKCKAAVSWEAGKPLVIEEVEVAPPQAGEVRLKILYTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTHLKPGDHALPVFTGECGDCPHCKSEESNMCDLLRINTDRGVMIHDSQTRFSIKGQPIYHFVGTSTFSEYTVVHAGCVAKVNPAAPLDKICVLSCGICTGLGATINVAKPKPGSSVAIFGLGAVGLAAAEGARISGASRIIGVDLVSSRFEEAKKFGVNEFVNPKDHDKPVQEVIAAMTNGGVDRAVECTGSIQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPVNFLNERTLKGTFYGNYKPRTDLPSVVEKYMNGELELEKFITHTVPFSEINKAFDYMLKGESIRCIIRMGE* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g2018 380 Pfam Alcohol dehydrogenase GroES-like domain 36 163 IPR013154 -
Gso4g2018 380 Gene3D - 19 370 - -
Gso4g2018 380 SUPERFAMILY GroES-like 328 377 IPR011032 -
Gso4g2018 380 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 169 343 IPR036291 -
Gso4g2018 380 CDD alcohol_DH_plants 9 377 - -
Gso4g2018 380 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Gso4g2018 380 Gene3D - 183 321 - -
Gso4g2018 380 Pfam Zinc-binding dehydrogenase 206 330 IPR013149 -
Gso4g2018 380 PANTHER ALCOHOL DEHYDROGENASE-RELATED 4 378 - -
Gso4g2018 380 SUPERFAMILY GroES-like 4 186 IPR011032 -
Gso4g2018 380 PANTHER ALCOHOL DEHYDROGENASE 4 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g2018 Gso-Chr4 50524830 50527806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g2018 37 370 Monolignol Biosynthesis Gene Families AT1G72680 25.369 1.06e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g2018 K18857 - gmx:100783858 771.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g2018 4 50524830 50527806 Gso4g2018 4 50524830 50527806 ECH