Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g2016 ATGAAAAGGTGTTGGTTGGTTGGGGTCTTGATTGTGGTGGGGTGTGCCTGCATGATGGGCACAGTTGGAGTAGAAGGGTACCCTGATGAGGATCTCATAGTAAGTTTACCTGGCCAACCCAAAGTTGGGTTCAAGCAATATGCAGGGTATGTTGATATTGATGTCAAGCATGGGAGAAGCCTTTTCTACTATTTTGTGGAGGCTGAGAATGGCCCTGATAAGAAGCCCCTCACTCTTTGGCTCAATGGAGGCCCGGGATGTTCCTCCATTGGAGGAGGTGCTTTCACTGAGTTGGGTCCCTTTTATCCCAAAGGTGATGGACGTGGTCTCCGAAGAAATTCAATGTCTTGGAATAGAGCATCCAACCTTCTCTTTGTGGAGTCCCCAGCTGGAGTTGGGTGGTCATATTCAAACAAAACTTCAGATTACAACTCTGGAGACTCCTCCACCGCCACTGATATGCTTCTGTTCTTGCGGAAATGGTACGAGAAGTTTCCTTCCTACAGATCAAGGGAGTTGTTCCTTACTGGAGAAAGCTATGCAGGACATTATATACCACAGTTAGCTAATGTTCTTTTGGACTACAATGCTCATTCAACTGGTTTCAAATTCAATATTAAAGGAGTTGCTATTGGAAACCCACTTCTGAAACTTGATCGTGATGCACAAGCAACATATGAATACTTCTGGTCACATGGAATGATTTCAGATGAAATTGGCCTAGCCATTACGAATGATTGCGATTTTGATGATTATGTCTTTGCAAGTACACATAATGTATCTAAATCATGCAATGAAGCAATAAATGAAGCAAATGAAATTGTTGGCGATTACATAAACAACTATGATGTGATTCTGGATGTGTGTTATCCATCCATAGTTGAACAAGAGCTGAGATTGAAAAAAATGGCTACTAAAATAAGCATAGGTGTAGATGTTTGTATGACTTATGAAAGAAGTTTTTATTTCAACCTCCCTGAGGTTCAGAAGGCTCTCCATGCAAACCGTACCAATCTTCCGTATCAATGGTCCATGTGCAGTGGGGTCTTAAATTATAGCGACACTGATCCTAACATAGATATCCTTCCAGTTATTAAAAAGATTGTTCAAAACCATATTCCAGTATGGGTTTTCAGTGGAGACCAAGATTCTGTTGTGCCATTACTAGGTTCTCGAACACTAATTCGTGAACTAGCTCATGATCTAAAGTTCAAGATAACAGTCCCATATGGAGCTTGGTTCCACAAAGGCCAGGTTGGAGGTTGGGTAACCGAGTATGGAAATTTGTTGACTTTTGCCACTGTAAGAGGAGCTGCTCACATGGTACCCTATGCACAACCTTCAAGAGCACTCCATCTCTTTAGTTCATTTGTGCTTAGAGAAAGATTGCCAAACACAACACACCCTTCAATTGATGATTAA 1422 0.417 MKRCWLVGVLIVVGCACMMGTVGVEGYPDEDLIVSLPGQPKVGFKQYAGYVDIDVKHGRSLFYYFVEAENGPDKKPLTLWLNGGPGCSSIGGGAFTELGPFYPKGDGRGLRRNSMSWNRASNLLFVESPAGVGWSYSNKTSDYNSGDSSTATDMLLFLRKWYEKFPSYRSRELFLTGESYAGHYIPQLANVLLDYNAHSTGFKFNIKGVAIGNPLLKLDRDAQATYEYFWSHGMISDEIGLAITNDCDFDDYVFASTHNVSKSCNEAINEANEIVGDYINNYDVILDVCYPSIVEQELRLKKMATKISIGVDVCMTYERSFYFNLPEVQKALHANRTNLPYQWSMCSGVLNYSDTDPNIDILPVIKKIVQNHIPVWVFSGDQDSVVPLLGSRTLIRELAHDLKFKITVPYGAWFHKGQVGGWVTEYGNLLTFATVRGAAHMVPYAQPSRALHLFSSFVLRERLPNTTHPSIDD* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g2016 473 Gene3D alpha/beta hydrolase 28 290 IPR029058 -
Gso4g2016 473 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 15 - -
Gso4g2016 473 SUPERFAMILY alpha/beta-Hydrolases 25 467 IPR029058 -
Gso4g2016 473 Gene3D - 361 459 - -
Gso4g2016 473 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 6 467 IPR001563 GO:0004185|GO:0006508
Gso4g2016 473 Pfam Serine carboxypeptidase 38 458 IPR001563 GO:0004185|GO:0006508
Gso4g2016 473 PANTHER CARBOXYPEPTIDASE 6 467 - -
Gso4g2016 473 Gene3D - 314 350 - -
Gso4g2016 473 ProSitePatterns Serine carboxypeptidases, serine active site. 175 182 IPR018202 GO:0004185
Gso4g2016 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 113 125 IPR001563 GO:0004185|GO:0006508
Gso4g2016 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 126 136 IPR001563 GO:0004185|GO:0006508
Gso4g2016 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 161 186 IPR001563 GO:0004185|GO:0006508
Gso4g2016 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 430 443 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g2016 Gso-Chr4 50506453 50510406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g2016 321 458 Calmodulin-binding Proteins AT2G22960 26.241 1.46e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g2016 K16297 - gmx:100815723 978.008
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g2016 4 50506453 50510406 Gso4g2016 4 50506453 50510406 ECH
Gso4g2016 4 50506453 50510406 Gso6g1035 6 10085939 10089917 GST