Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g2008 ATGTCAAGCAATGCATTAACTCTTTTTATCTTGTTTCTTAACATCTTGTGTCCATCCATCTCTGGAGCTCTGAACCACGAAGGCCTCTCTCTACTTTCATGGCTTTCAACCTTCAACTCCTCCAACTCTGCTACCGCCTTCTCTTCATGGGATCCAACAAACAAAGACCCTTGCACATGGGACTACATAACATGTTCCGAAGAAGGTTTTGTGTCAGAGATCATAATAACATCCATTGATATACGTAGCGGTTTCCCCTCACAGCTCCATTCTTTTGGCCACCTCACCACTCTTGTCATCTCAAATGGAAATCTCACTGGTCAGATTCCAAGTTCAGTGGGAAACTTGTCCTCTTTGGTCACTTTGGACCTTAGCTTCAATGCTTTATCAGGAAGCATTCCGGAAGAAATAGGAATGCTATCTAAGCTGCAGTTGCTGTTGCTGAATTCAAATTCCTTGCAGGGTGGAATTCCAACCACAATTGGAAACTGTTCAAGGCTTCGGCATGTGGAAATTTTCGACAACCAGCTCTCTGGAATGATACCTGGAGAAATAGGCCAATTGAGGGCTCTTGAAACACTAAGAGCAGGAGGAAATCCAGGTATTCATGGAGAAATTCCAATGCAGATATCAGACTGCAAGGCCCTTGTTTTTCTGGGACTTGCGGTTACCGGGGTTTCTGGGGAGATTCCACCAAGTATAGGAGAGCTTAAGAATCTCAAGACACTTTCAGTCTACACAGCACAACTCACAGGTCATATCCCAGCAGAGATTCAGAACTGCTCAGCCTTGGAGGATTTGTTTCTGTATGAAAATCAGCTTTCTGGAAGTATTCCTTATGAATTGGGCTCCGTGCAAAGCCTCAGGAGGGTGTTGCTGTGGAAGAACAATTTAACTGGCACCATTCCAGAAAGTCTTGGGAACTGTACAAATCTCAAGGTTATAGATTTCTCTTTGAATTCTCTGGGGGGTCAGATACCTGTGAGTCTCAGTAGTCTACTCCTGTTGGAGGAGTTTCTTTTGTCTGATAATAATATTTTTGGAGAAATACCTTCCTATATTGGCAACTTTTCCAGGCTGAAGCAAATTGAATTGGATAACAACAAATTCTCTGGGGAGATTCCACCTGTCATGGGGCAACTGAAGGAACTCACACTCTTTTATGCCTGGCAGAATCAACTGAATGGAAGTATACCAACAGAACTATCCAACTGTGAGAAACTTGAAGCACTTGATCTCTCACACAATTTCCTCAGCGGTTCCATTCCAAGTTCACTCTTTCACCTAGGGAATTTGACTCAGTTGTTGCTGATATCAAACAGACTTTCAGGTCAAATTCCAGCAGATATTGGCAGTTGCACCAGCTTGATCAGGTTACGGCTGGGATCAAACAACTTTACCGGTCAAATTCCATCAGAAATAGGTCTTTTAAGCAGTTTGACCTTTATTGAGTTGTCAAATAATCTACTCAGTGGAGATATTCCCTTTGAGATAGGTAACTGTGCTCATCTAGAGTTGCTTGACTTGCACGGCAATGTGCTGCAAGGAACCATTCCTTCCTCATTAAAATTCCTAGTTGGTCTTAATGTCTTAGATCTTTCTCTAAACAGAATAACTGGAAGCATTCCTGAGAACTTGGGCAAGCTTACGTCTCTAAATAAGTTGATTCTGAGTGGAAACCTTATCTCCGGTGTGATCCCGGGGACGCTGGGGCTGTGTAAGGCTTTGCAGTTGCTGGATATAAGTAACAATAGGATCACTGGTTCTATTCCTGATGAGATCGGTTATTTGCAAGAATTAGATATCCTCTTGAACTTGAGTTGGAATTCTCTTACTGGCCCCATTCCAGAGACCTTCTCAAATCTCTCAAAACTATCCATCTTGGATCTCTCTCACAACAAGCTCACAGGTACACTCACAGTTCTGGTTAGTCTTGACAATCTAGTGTCTCTAAATGTCTCCTACAATAGCTTTTCTGGTTCTCTTCCTGATACAAAGTTCTTCCGGGATCTACCCACTGCTGCGTTTGCTGGTAACCCTGACCTTTGCATTAGCAAGTGTCATGCAAGTGAAGATGGCCAAGGCTTCAAGTCAATAAGAAATGTTATTCTCTACACTTTCCTTGGGGTTGTTTTAATCTCTATTTTTGTCACTTTTGGAGTAATTTTAACTCTCAGGATTCAAGGGGGAAACTTTGGAAGGAATTTTGATGAAGGTGGTGAAATGGAATGGGCTTTCACTCCATTCCAAAAACTCAACTTCTCCATCAATGACATTTTGACGAAGTTGTCAGAATCAAACATTGTGGGAAAGGGTTGCTCAGGAATTGTTTATCGTGTGGAGACTCCAATGAAGCAGATGATTGCAGTGAAGAAGCTATGGCCAATAAAGAAGGAAGAGCCACCAGAGAGAGACTTGTTTACTGCAGAAGTTCAGACCCTTGGATCAATAAGACATAAGAATATAGTGAGACTTTTAGGATGCTGTGACAATGGAAGAACTAGATTGCTCTTATTTGATTATATATGCAACGGGAGTTTGTTCGGATTACTCCACGAAAATAGATTGTTCTTGGATTGGGATGCAAGGTATAAGATCATACTGGGAGCAGCTCATGGTCTAGAATATCTTCATCATGATTGTATCCCTCCAATTGTCCATAGGGACATTAAGGCTAACAACATCTTGGTAGGTCCACAATTTGAAGCTTTCCTCGCAGATTTTGGCCTTGCAAAACTTGTGAGTTCCTCAGAGTGCTCAGGAGCCTCTCATACTGTTGCAGGTTCTTATGGATACATAGCTCCTGAATATGGATACAGTTTAAGGATCACAGAAAAGAGTGATGTGTACAGCTATGGTGTTGTTCTCCTTGAGGTCTTAACGGGGATGGAACCAACTGAAAATAGGATTCCAGAGGGTGCCCACATTGTCGCATGGGTTAGCAACGAAATCCGAGAGAAGAGAAGAGAATTTACATCTATCCTTGACCAGCAACTAGTATTGCAGAATGGAACAAAAACCTCTGAGATGCTTCAGGTTCTAGGAGTGGCTCTCCTATGTGTGAATCCATCCCCAGAAGAACGACCTACTATGAAAGATGTAACGGCAATGCTCAAGGAGATCAGGCATGAAAATGATGATTTCGAGAAACCAAATTTTCTCCATAAAAGCATGGTTACCACCAATCCAAAAGCAGCAGTTCACTGTTCAAGTTTCTCCAGATCATGTGAACCTTTAATAATAGAATCAACATCTTCTTCTTCTGTATAG 3270 0.4211 MSSNALTLFILFLNILCPSISGALNHEGLSLLSWLSTFNSSNSATAFSSWDPTNKDPCTWDYITCSEEGFVSEIIITSIDIRSGFPSQLHSFGHLTTLVISNGNLTGQIPSSVGNLSSLVTLDLSFNALSGSIPEEIGMLSKLQLLLLNSNSLQGGIPTTIGNCSRLRHVEIFDNQLSGMIPGEIGQLRALETLRAGGNPGIHGEIPMQISDCKALVFLGLAVTGVSGEIPPSIGELKNLKTLSVYTAQLTGHIPAEIQNCSALEDLFLYENQLSGSIPYELGSVQSLRRVLLWKNNLTGTIPESLGNCTNLKVIDFSLNSLGGQIPVSLSSLLLLEEFLLSDNNIFGEIPSYIGNFSRLKQIELDNNKFSGEIPPVMGQLKELTLFYAWQNQLNGSIPTELSNCEKLEALDLSHNFLSGSIPSSLFHLGNLTQLLLISNRLSGQIPADIGSCTSLIRLRLGSNNFTGQIPSEIGLLSSLTFIELSNNLLSGDIPFEIGNCAHLELLDLHGNVLQGTIPSSLKFLVGLNVLDLSLNRITGSIPENLGKLTSLNKLILSGNLISGVIPGTLGLCKALQLLDISNNRITGSIPDEIGYLQELDILLNLSWNSLTGPIPETFSNLSKLSILDLSHNKLTGTLTVLVSLDNLVSLNVSYNSFSGSLPDTKFFRDLPTAAFAGNPDLCISKCHASEDGQGFKSIRNVILYTFLGVVLISIFVTFGVILTLRIQGGNFGRNFDEGGEMEWAFTPFQKLNFSINDILTKLSESNIVGKGCSGIVYRVETPMKQMIAVKKLWPIKKEEPPERDLFTAEVQTLGSIRHKNIVRLLGCCDNGRTRLLLFDYICNGSLFGLLHENRLFLDWDARYKIILGAAHGLEYLHHDCIPPIVHRDIKANNILVGPQFEAFLADFGLAKLVSSSECSGASHTVAGSYGYIAPEYGYSLRITEKSDVYSYGVVLLEVLTGMEPTENRIPEGAHIVAWVSNEIREKRREFTSILDQQLVLQNGTKTSEMLQVLGVALLCVNPSPEERPTMKDVTAMLKEIRHENDDFEKPNFLHKSMVTTNPKAAVHCSSFSRSCEPLIIESTSSSSV* 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g2008 1089 SMART serkin_6 763 1038 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g2008 1089 Gene3D Ribonuclease Inhibitor 185 400 IPR032675 -
Gso4g2008 1089 Gene3D Transferase(Phosphotransferase) domain 1 842 1061 - -
Gso4g2008 1089 ProSiteProfiles Leucine-rich repeat profile. 624 646 IPR001611 GO:0005515
Gso4g2008 1089 SUPERFAMILY Protein kinase-like (PK-like) 759 1065 IPR011009 -
Gso4g2008 1089 SMART LRR_typ_2 140 164 IPR003591 -
Gso4g2008 1089 SMART LRR_typ_2 525 548 IPR003591 -
Gso4g2008 1089 SMART LRR_typ_2 285 309 IPR003591 -
Gso4g2008 1089 SMART LRR_typ_2 429 453 IPR003591 -
Gso4g2008 1089 SMART LRR_typ_2 549 572 IPR003591 -
Gso4g2008 1089 SMART LRR_typ_2 645 678 IPR003591 -
Gso4g2008 1089 SMART LRR_typ_2 116 139 IPR003591 -
Gso4g2008 1089 SMART LRR_typ_2 622 641 IPR003591 -
Gso4g2008 1089 SMART LRR_typ_2 333 357 IPR003591 -
Gso4g2008 1089 SMART LRR_typ_2 477 501 IPR003591 -
Gso4g2008 1089 ProSiteProfiles Leucine-rich repeat profile. 407 429 IPR001611 GO:0005515
Gso4g2008 1089 Pfam Protein kinase domain 765 1035 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g2008 1089 ProSiteProfiles Protein kinase domain profile. 763 1046 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g2008 1089 ProSitePatterns Protein kinases ATP-binding region signature. 769 797 IPR017441 GO:0005524
Gso4g2008 1089 Pfam Leucine Rich Repeat 407 429 IPR001611 GO:0005515
Gso4g2008 1089 Gene3D Ribonuclease Inhibitor 407 692 IPR032675 -
Gso4g2008 1089 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 3 1059 - -
Gso4g2008 1089 Gene3D Ribonuclease Inhibitor 24 184 IPR032675 -
Gso4g2008 1089 SUPERFAMILY RNI-like 326 663 - -
Gso4g2008 1089 PRINTS Leucine-rich repeat signature 408 421 - -
Gso4g2008 1089 PRINTS Leucine-rich repeat signature 622 635 - -
Gso4g2008 1089 Pfam Leucine rich repeat 94 153 IPR001611 GO:0005515
Gso4g2008 1089 Pfam Leucine rich repeat 503 562 IPR001611 GO:0005515
Gso4g2008 1089 Pfam Leucine rich repeat 604 657 IPR001611 GO:0005515
Gso4g2008 1089 SUPERFAMILY RNI-like 84 418 - -
Gso4g2008 1089 PANTHER LRR RECEPTOR-LIKE KINASE 3 1059 - -
Gso4g2008 1089 Pfam Leucine rich repeat N-terminal domain 25 66 IPR013210 -
Gso4g2008 1089 ProSitePatterns Serine/Threonine protein kinases active-site signature. 885 897 IPR008271 GO:0004672|GO:0006468
Gso4g2008 1089 Gene3D Phosphorylase Kinase; domain 1 739 841 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g2008 Gso-Chr4 50434367 50438470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g2008 23 1077 Receptor kinase-like Gene Family AT5G56040 46.944 0.0 917
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso4g2008 Pkinase 2.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g2008 - - gmx:100780101 2108.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g2008 4 50434367 50438470 Gso4g2008 4 50434367 50438470 ECH
Gso4g2008 4 50434367 50438470 Gso6g1048 6 10173885 10178055 GST