Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso4g2008 | ATGTCAAGCAATGCATTAACTCTTTTTATCTTGTTTCTTAACATCTTGTGTCCATCCATCTCTGGAGCTCTGAACCACGAAGGCCTCTCTCTACTTTCATGGCTTTCAACCTTCAACTCCTCCAACTCTGCTACCGCCTTCTCTTCATGGGATCCAACAAACAAAGACCCTTGCACATGGGACTACATAACATGTTCCGAAGAAGGTTTTGTGTCAGAGATCATAATAACATCCATTGATATACGTAGCGGTTTCCCCTCACAGCTCCATTCTTTTGGCCACCTCACCACTCTTGTCATCTCAAATGGAAATCTCACTGGTCAGATTCCAAGTTCAGTGGGAAACTTGTCCTCTTTGGTCACTTTGGACCTTAGCTTCAATGCTTTATCAGGAAGCATTCCGGAAGAAATAGGAATGCTATCTAAGCTGCAGTTGCTGTTGCTGAATTCAAATTCCTTGCAGGGTGGAATTCCAACCACAATTGGAAACTGTTCAAGGCTTCGGCATGTGGAAATTTTCGACAACCAGCTCTCTGGAATGATACCTGGAGAAATAGGCCAATTGAGGGCTCTTGAAACACTAAGAGCAGGAGGAAATCCAGGTATTCATGGAGAAATTCCAATGCAGATATCAGACTGCAAGGCCCTTGTTTTTCTGGGACTTGCGGTTACCGGGGTTTCTGGGGAGATTCCACCAAGTATAGGAGAGCTTAAGAATCTCAAGACACTTTCAGTCTACACAGCACAACTCACAGGTCATATCCCAGCAGAGATTCAGAACTGCTCAGCCTTGGAGGATTTGTTTCTGTATGAAAATCAGCTTTCTGGAAGTATTCCTTATGAATTGGGCTCCGTGCAAAGCCTCAGGAGGGTGTTGCTGTGGAAGAACAATTTAACTGGCACCATTCCAGAAAGTCTTGGGAACTGTACAAATCTCAAGGTTATAGATTTCTCTTTGAATTCTCTGGGGGGTCAGATACCTGTGAGTCTCAGTAGTCTACTCCTGTTGGAGGAGTTTCTTTTGTCTGATAATAATATTTTTGGAGAAATACCTTCCTATATTGGCAACTTTTCCAGGCTGAAGCAAATTGAATTGGATAACAACAAATTCTCTGGGGAGATTCCACCTGTCATGGGGCAACTGAAGGAACTCACACTCTTTTATGCCTGGCAGAATCAACTGAATGGAAGTATACCAACAGAACTATCCAACTGTGAGAAACTTGAAGCACTTGATCTCTCACACAATTTCCTCAGCGGTTCCATTCCAAGTTCACTCTTTCACCTAGGGAATTTGACTCAGTTGTTGCTGATATCAAACAGACTTTCAGGTCAAATTCCAGCAGATATTGGCAGTTGCACCAGCTTGATCAGGTTACGGCTGGGATCAAACAACTTTACCGGTCAAATTCCATCAGAAATAGGTCTTTTAAGCAGTTTGACCTTTATTGAGTTGTCAAATAATCTACTCAGTGGAGATATTCCCTTTGAGATAGGTAACTGTGCTCATCTAGAGTTGCTTGACTTGCACGGCAATGTGCTGCAAGGAACCATTCCTTCCTCATTAAAATTCCTAGTTGGTCTTAATGTCTTAGATCTTTCTCTAAACAGAATAACTGGAAGCATTCCTGAGAACTTGGGCAAGCTTACGTCTCTAAATAAGTTGATTCTGAGTGGAAACCTTATCTCCGGTGTGATCCCGGGGACGCTGGGGCTGTGTAAGGCTTTGCAGTTGCTGGATATAAGTAACAATAGGATCACTGGTTCTATTCCTGATGAGATCGGTTATTTGCAAGAATTAGATATCCTCTTGAACTTGAGTTGGAATTCTCTTACTGGCCCCATTCCAGAGACCTTCTCAAATCTCTCAAAACTATCCATCTTGGATCTCTCTCACAACAAGCTCACAGGTACACTCACAGTTCTGGTTAGTCTTGACAATCTAGTGTCTCTAAATGTCTCCTACAATAGCTTTTCTGGTTCTCTTCCTGATACAAAGTTCTTCCGGGATCTACCCACTGCTGCGTTTGCTGGTAACCCTGACCTTTGCATTAGCAAGTGTCATGCAAGTGAAGATGGCCAAGGCTTCAAGTCAATAAGAAATGTTATTCTCTACACTTTCCTTGGGGTTGTTTTAATCTCTATTTTTGTCACTTTTGGAGTAATTTTAACTCTCAGGATTCAAGGGGGAAACTTTGGAAGGAATTTTGATGAAGGTGGTGAAATGGAATGGGCTTTCACTCCATTCCAAAAACTCAACTTCTCCATCAATGACATTTTGACGAAGTTGTCAGAATCAAACATTGTGGGAAAGGGTTGCTCAGGAATTGTTTATCGTGTGGAGACTCCAATGAAGCAGATGATTGCAGTGAAGAAGCTATGGCCAATAAAGAAGGAAGAGCCACCAGAGAGAGACTTGTTTACTGCAGAAGTTCAGACCCTTGGATCAATAAGACATAAGAATATAGTGAGACTTTTAGGATGCTGTGACAATGGAAGAACTAGATTGCTCTTATTTGATTATATATGCAACGGGAGTTTGTTCGGATTACTCCACGAAAATAGATTGTTCTTGGATTGGGATGCAAGGTATAAGATCATACTGGGAGCAGCTCATGGTCTAGAATATCTTCATCATGATTGTATCCCTCCAATTGTCCATAGGGACATTAAGGCTAACAACATCTTGGTAGGTCCACAATTTGAAGCTTTCCTCGCAGATTTTGGCCTTGCAAAACTTGTGAGTTCCTCAGAGTGCTCAGGAGCCTCTCATACTGTTGCAGGTTCTTATGGATACATAGCTCCTGAATATGGATACAGTTTAAGGATCACAGAAAAGAGTGATGTGTACAGCTATGGTGTTGTTCTCCTTGAGGTCTTAACGGGGATGGAACCAACTGAAAATAGGATTCCAGAGGGTGCCCACATTGTCGCATGGGTTAGCAACGAAATCCGAGAGAAGAGAAGAGAATTTACATCTATCCTTGACCAGCAACTAGTATTGCAGAATGGAACAAAAACCTCTGAGATGCTTCAGGTTCTAGGAGTGGCTCTCCTATGTGTGAATCCATCCCCAGAAGAACGACCTACTATGAAAGATGTAACGGCAATGCTCAAGGAGATCAGGCATGAAAATGATGATTTCGAGAAACCAAATTTTCTCCATAAAAGCATGGTTACCACCAATCCAAAAGCAGCAGTTCACTGTTCAAGTTTCTCCAGATCATGTGAACCTTTAATAATAGAATCAACATCTTCTTCTTCTGTATAG | 3270 | 0.4211 | MSSNALTLFILFLNILCPSISGALNHEGLSLLSWLSTFNSSNSATAFSSWDPTNKDPCTWDYITCSEEGFVSEIIITSIDIRSGFPSQLHSFGHLTTLVISNGNLTGQIPSSVGNLSSLVTLDLSFNALSGSIPEEIGMLSKLQLLLLNSNSLQGGIPTTIGNCSRLRHVEIFDNQLSGMIPGEIGQLRALETLRAGGNPGIHGEIPMQISDCKALVFLGLAVTGVSGEIPPSIGELKNLKTLSVYTAQLTGHIPAEIQNCSALEDLFLYENQLSGSIPYELGSVQSLRRVLLWKNNLTGTIPESLGNCTNLKVIDFSLNSLGGQIPVSLSSLLLLEEFLLSDNNIFGEIPSYIGNFSRLKQIELDNNKFSGEIPPVMGQLKELTLFYAWQNQLNGSIPTELSNCEKLEALDLSHNFLSGSIPSSLFHLGNLTQLLLISNRLSGQIPADIGSCTSLIRLRLGSNNFTGQIPSEIGLLSSLTFIELSNNLLSGDIPFEIGNCAHLELLDLHGNVLQGTIPSSLKFLVGLNVLDLSLNRITGSIPENLGKLTSLNKLILSGNLISGVIPGTLGLCKALQLLDISNNRITGSIPDEIGYLQELDILLNLSWNSLTGPIPETFSNLSKLSILDLSHNKLTGTLTVLVSLDNLVSLNVSYNSFSGSLPDTKFFRDLPTAAFAGNPDLCISKCHASEDGQGFKSIRNVILYTFLGVVLISIFVTFGVILTLRIQGGNFGRNFDEGGEMEWAFTPFQKLNFSINDILTKLSESNIVGKGCSGIVYRVETPMKQMIAVKKLWPIKKEEPPERDLFTAEVQTLGSIRHKNIVRLLGCCDNGRTRLLLFDYICNGSLFGLLHENRLFLDWDARYKIILGAAHGLEYLHHDCIPPIVHRDIKANNILVGPQFEAFLADFGLAKLVSSSECSGASHTVAGSYGYIAPEYGYSLRITEKSDVYSYGVVLLEVLTGMEPTENRIPEGAHIVAWVSNEIREKRREFTSILDQQLVLQNGTKTSEMLQVLGVALLCVNPSPEERPTMKDVTAMLKEIRHENDDFEKPNFLHKSMVTTNPKAAVHCSSFSRSCEPLIIESTSSSSV* | 1090 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso4g2008 | 1089 | SMART | serkin_6 | 763 | 1038 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Gso4g2008 | 1089 | Gene3D | Ribonuclease Inhibitor | 185 | 400 | IPR032675 | - | |
Gso4g2008 | 1089 | Gene3D | Transferase(Phosphotransferase) domain 1 | 842 | 1061 | - | - | |
Gso4g2008 | 1089 | ProSiteProfiles | Leucine-rich repeat profile. | 624 | 646 | IPR001611 | GO:0005515 | |
Gso4g2008 | 1089 | SUPERFAMILY | Protein kinase-like (PK-like) | 759 | 1065 | IPR011009 | - | |
Gso4g2008 | 1089 | SMART | LRR_typ_2 | 140 | 164 | IPR003591 | - | |
Gso4g2008 | 1089 | SMART | LRR_typ_2 | 525 | 548 | IPR003591 | - | |
Gso4g2008 | 1089 | SMART | LRR_typ_2 | 285 | 309 | IPR003591 | - | |
Gso4g2008 | 1089 | SMART | LRR_typ_2 | 429 | 453 | IPR003591 | - | |
Gso4g2008 | 1089 | SMART | LRR_typ_2 | 549 | 572 | IPR003591 | - | |
Gso4g2008 | 1089 | SMART | LRR_typ_2 | 645 | 678 | IPR003591 | - | |
Gso4g2008 | 1089 | SMART | LRR_typ_2 | 116 | 139 | IPR003591 | - | |
Gso4g2008 | 1089 | SMART | LRR_typ_2 | 622 | 641 | IPR003591 | - | |
Gso4g2008 | 1089 | SMART | LRR_typ_2 | 333 | 357 | IPR003591 | - | |
Gso4g2008 | 1089 | SMART | LRR_typ_2 | 477 | 501 | IPR003591 | - | |
Gso4g2008 | 1089 | ProSiteProfiles | Leucine-rich repeat profile. | 407 | 429 | IPR001611 | GO:0005515 | |
Gso4g2008 | 1089 | Pfam | Protein kinase domain | 765 | 1035 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Gso4g2008 | 1089 | ProSiteProfiles | Protein kinase domain profile. | 763 | 1046 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Gso4g2008 | 1089 | ProSitePatterns | Protein kinases ATP-binding region signature. | 769 | 797 | IPR017441 | GO:0005524 | |
Gso4g2008 | 1089 | Pfam | Leucine Rich Repeat | 407 | 429 | IPR001611 | GO:0005515 | |
Gso4g2008 | 1089 | Gene3D | Ribonuclease Inhibitor | 407 | 692 | IPR032675 | - | |
Gso4g2008 | 1089 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED | 3 | 1059 | - | - | |
Gso4g2008 | 1089 | Gene3D | Ribonuclease Inhibitor | 24 | 184 | IPR032675 | - | |
Gso4g2008 | 1089 | SUPERFAMILY | RNI-like | 326 | 663 | - | - | |
Gso4g2008 | 1089 | PRINTS | Leucine-rich repeat signature | 408 | 421 | - | - | |
Gso4g2008 | 1089 | PRINTS | Leucine-rich repeat signature | 622 | 635 | - | - | |
Gso4g2008 | 1089 | Pfam | Leucine rich repeat | 94 | 153 | IPR001611 | GO:0005515 | |
Gso4g2008 | 1089 | Pfam | Leucine rich repeat | 503 | 562 | IPR001611 | GO:0005515 | |
Gso4g2008 | 1089 | Pfam | Leucine rich repeat | 604 | 657 | IPR001611 | GO:0005515 | |
Gso4g2008 | 1089 | SUPERFAMILY | RNI-like | 84 | 418 | - | - | |
Gso4g2008 | 1089 | PANTHER | LRR RECEPTOR-LIKE KINASE | 3 | 1059 | - | - | |
Gso4g2008 | 1089 | Pfam | Leucine rich repeat N-terminal domain | 25 | 66 | IPR013210 | - | |
Gso4g2008 | 1089 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 885 | 897 | IPR008271 | GO:0004672|GO:0006468 | |
Gso4g2008 | 1089 | Gene3D | Phosphorylase Kinase; domain 1 | 739 | 841 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso4g2008 | Gso-Chr4 | 50434367 | 50438470 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso4g2008 | 23 | 1077 | Receptor kinase-like Gene Family | AT5G56040 | 46.944 | 0.0 | 917 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-XI-1 | Gso4g2008 | Pkinase | 2.8e-42 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso4g2008 | - | - | gmx:100780101 | 2108.95 |