Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g2002 ATGGACAAGAAGCTGCCCCTCTTGTTCATTTTTTCAGCAGCCTTGGTGATGGAAGCAGTGTTGTTGGTTAGTGTTGTGGCTGAACCAGTGGAAGATAAACAAGCTTTGCTTGATTTCCTTGACAACATGAGTCACTCTCCTCATGTCAACTGGGATGAGAACACTTCTGTTTGCCAAAGCTGGAGAGGAGTGATTTGCAACTCTGACGAGTCCCGAGTCATAGAACTTCGATTGCCTGGAGCTGGGTTGAGTGGTCCAATCTCTCCCAACACCCTCAGTCGCCTCTCGGCGCTTGAGGTTGTTAGTCTTAGATCAAATGGTATAAGTGGCCCTTTCCCTGATGGTTTCTCTGAGCTGAAAAACTTGACCAGCCTCTATCTCCAATCCAACAAGTTTTCTGGGTCGTTGCCATTGGATTTTTCAGTTTGGAATAACCTTAGTGTTGTCAATTTGTCCAACAATTCTTTCAATGGGAGCATCCCCTTTTCAATTTCAAATCTGACTCATCTCACCTCATTAGTCCTTGCCAACAACTCCCTTTCGGGTCAGATTCCTGATCTCAATATTCGTAGCCTGCGGGAGCTGAATCTAGCCAATAATAACCTTAGTGGGGTTGTGCCTAATTCCCTTCTTAGATTTCCTAGTTCGGCCTTTGCCGGTAACAATCTTACATCAGCACATGCACTCCCTCCAGCTTTTCCTATGGAGCCACCAGCTGCCTATCCGGCAAAGAAATCGAAAGGACTCAGTGAACCTGCATTGTTGGGTATCATCATTGGTGCTTGTGTGCTGGGGTTTGTCTTGATTGCAGTTTTCATGATTGTCTGCTGCTATCAGAATGCAGGTGTTAATGTGCAAGCAGTGAAATCCCAGAAAAAACATGCCACTCTGAAAACAGAATCTTCTGGAAGTCAAGACAAAAACAACAAAATTGTCTTCTTTGAGGGTTGCAATCTTGCATTTGATCTAGAGGATTTGTTGAGAGCTTCTGCTGAAATTCTTGGAAAGGGTACCTTTGGCATGACATATAAGGCTGCTCTAGAGGATGCAACCACTGTAGTGGTGAAGAGGTTGAAGGAGGTCACAGTCGGAAAACGAGATTTTGAACAGCAGATGGAGGTGGTGGGGAAAATTAAGCACGAAAATGTGGATGCAGTGAGGGCATATTATTATTCAAAGGAGGAGAAACTCATAGTATATGATTACTATCAACAAGGCAGTGTTTCTGCTTTGTTACATGGCAAAGGAGGGGAAGGCAGAAGTTCTTTAGACTGGGATAGCCGCTTGAGAATTGCAATTGGTGCAGCCAGAGGCATTGCTTGCATCCACGCTCAACATGGAGGGAAACTCGTTCATGGAAACCTAAAGGCCTCAAACATCTTCTTCAACTCACAAGGATATGGATGCATATCTGATATTGGCTTGGCAACATTGATGAGTCCAATACCCATGCCAGCAATGAGAGCAACCGGATACCGTGCACCAGAAGTAACAGACACACGCAAAGCAACTCATGCATCTGATGTGTACAGCTTCGGGGTGCTGCTACTTGAGCTTCTGACTGGGAAATCCCCCATAAACAGCACAGAAGGTGAGCAGGTTGTCCACTTAGTTAGATGGGTGAATTCTGTGGTTAGAGAGGAGTGGACTGCAGAAGTGTTTGATGTACAGCTGCTGAGGTATCCAAACATAGAGGAAGAAATGGTGGGGATGCTACAAATAGGGATGGCTTGTGCTGCAAGAATACCGGATCAGAGACCAAAGATGCCTGATGTGGTGAGAATGATAGAGGAGATTCGTCGTGTAAATACGCCAAATCTACCATCCACCGAGTCTAGATCAGAAGCTTCTACACCCACCCCTCGTGCAGTTGACATACCTTCTACCTCTGTTCAACAATGA 1902 0.4543 MDKKLPLLFIFSAALVMEAVLLVSVVAEPVEDKQALLDFLDNMSHSPHVNWDENTSVCQSWRGVICNSDESRVIELRLPGAGLSGPISPNTLSRLSALEVVSLRSNGISGPFPDGFSELKNLTSLYLQSNKFSGSLPLDFSVWNNLSVVNLSNNSFNGSIPFSISNLTHLTSLVLANNSLSGQIPDLNIRSLRELNLANNNLSGVVPNSLLRFPSSAFAGNNLTSAHALPPAFPMEPPAAYPAKKSKGLSEPALLGIIIGACVLGFVLIAVFMIVCCYQNAGVNVQAVKSQKKHATLKTESSGSQDKNNKIVFFEGCNLAFDLEDLLRASAEILGKGTFGMTYKAALEDATTVVVKRLKEVTVGKRDFEQQMEVVGKIKHENVDAVRAYYYSKEEKLIVYDYYQQGSVSALLHGKGGEGRSSLDWDSRLRIAIGAARGIACIHAQHGGKLVHGNLKASNIFFNSQGYGCISDIGLATLMSPIPMPAMRATGYRAPEVTDTRKATHASDVYSFGVLLLELLTGKSPINSTEGEQVVHLVRWVNSVVREEWTAEVFDVQLLRYPNIEEEMVGMLQIGMACAARIPDQRPKMPDVVRMIEEIRRVNTPNLPSTESRSEASTPTPRAVDIPSTSVQQ* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g2002 633 Gene3D Phosphorylase Kinase; domain 1 292 402 - -
Gso4g2002 633 SUPERFAMILY L domain-like 46 213 - -
Gso4g2002 633 ProSiteProfiles Leucine-rich repeat profile. 191 212 IPR001611 GO:0005515
Gso4g2002 633 MobiDBLite consensus disorder prediction 603 633 - -
Gso4g2002 633 Pfam Protein tyrosine and serine/threonine kinase 332 556 IPR001245 GO:0004672|GO:0006468
Gso4g2002 633 SUPERFAMILY Protein kinase-like (PK-like) 332 597 IPR011009 -
Gso4g2002 633 Pfam Leucine Rich Repeat 191 211 IPR001611 GO:0005515
Gso4g2002 633 PANTHER LRR RECEPTOR-LIKE KINASE 16 625 - -
Gso4g2002 633 ProSitePatterns Protein kinases ATP-binding region signature. 334 365 IPR017441 GO:0005524
Gso4g2002 633 Pfam Leucine rich repeat N-terminal domain 31 67 IPR013210 -
Gso4g2002 633 ProSiteProfiles Protein kinase domain profile. 328 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g2002 633 PANTHER OS05G0588300 PROTEIN 16 625 - -
Gso4g2002 633 Gene3D Transferase(Phosphotransferase) domain 1 404 617 - -
Gso4g2002 633 Pfam Leucine rich repeat 87 132 IPR001611 GO:0005515
Gso4g2002 633 Gene3D Ribonuclease Inhibitor 30 234 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g2002 Gso-Chr4 50376559 50380096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g2002 27 624 Receptor kinase-like Gene Family AT4G23740 56.423 0.0 679
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gso4g2002 PK_Tyr_Ser-Thr 9e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g2002 - - gmx:100813065 1215.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g2002 4 50376559 50380096 Gso6g1056 6 10231902 10235721 GST