Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1999 ATGGAAGACAGTATCCTATGCAAACACACAGTGCATCGCAGCGTCACCAAGAAACTCATCTCCCCCAAAAAATCATCCCAAACCAATTCTTCAACACAAACAGAGCGCAGAATAGTGCGGATTTCATACACTGATCCAGACGCCACCGACTCCTCCAGCGACGAGGAAGGTTTCCCCTTGGTTCGCAAAAGAATGAAGCGCTATGTTAACCAGATTGAAATAGAAACCGCCGCGGAAAAAGTTGTTCGGAAGAGGCCCGCCGGTGAGCCTTGCAGGCGACCGGCGAAGCTTCACTCCGGGAAGAAGTTCCGCGGCGTCCGGCAGCGGCCGTGGGGGAAATGGGCGGCGGAGATTCGAGATCCGGCGAGAAGAGTGCGTCTCTGGCTGGGAACCTACGACACTGCCGAAGAAGCTGCCATGGTCTACGACAATGCCGCTATTCGGCTTCGAGGCCCTGACGCGTTGACAAACTTCCTAACGCCACCGCAAAGAGAGTCTCCGTCTCAGGCGACAACGGTGGCGGTGACCGAAGAAGCCTCCGGCTCCGGCTACGACTCCGGCGACGACCATTGCCAGCACAACCTCTCATCCCCCACTTCGGTGCTCCACTTCCGAAGCAACTCGGAGTCTGATCAGAAATCAGAACAAGTGTTGAGAGAGTGTGAGGGTGAGGGTGAGTTTTTGGCGCTGGATAACATGCCTCTGCCTGCTTGGGATGAAGTGTTCAATTTCGAAACGCCAGAGTACCCTCCCCTTCTCTTTCAAGAAGGGAATTTTCTTCATGATTATCAGTCCCAGATGTTGGGTGAAACGGTACCGTTTTCCTCGGACCAAGGGTTCAGTGACAGTAGTATCGTGCTCGCAGACTCGCTCATAGATTTCGACAAAGCTTGCCCTCCACCATCTACCTTGTGCCAGGTGGACGATTTCTTCCAAGACATTTTGTTAGCTTCTGATCCTCTCGTTCTGCTCTGA 975 0.5364 MEDSILCKHTVHRSVTKKLISPKKSSQTNSSTQTERRIVRISYTDPDATDSSSDEEGFPLVRKRMKRYVNQIEIETAAEKVVRKRPAGEPCRRPAKLHSGKKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAAMVYDNAAIRLRGPDALTNFLTPPQRESPSQATTVAVTEEASGSGYDSGDDHCQHNLSSPTSVLHFRSNSESDQKSEQVLRECEGEGEFLALDNMPLPAWDEVFNFETPEYPPLLFQEGNFLHDYQSQMLGETVPFSSDQGFSDSSIVLADSLIDFDKACPPPSTLCQVDDFFQDILLASDPLVLL* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1999 324 MobiDBLite consensus disorder prediction 17 56 - -
Gso4g1999 324 SUPERFAMILY DNA-binding domain 102 159 IPR016177 GO:0003677
Gso4g1999 324 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF1-LIKE 6 317 - -
Gso4g1999 324 SMART rav1_2 102 165 IPR001471 GO:0003700|GO:0006355
Gso4g1999 324 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 317 - -
Gso4g1999 324 Gene3D AP2/ERF domain 101 160 IPR036955 GO:0003700|GO:0006355
Gso4g1999 324 PRINTS Ethylene responsive element binding protein signature 103 114 IPR001471 GO:0003700|GO:0006355
Gso4g1999 324 PRINTS Ethylene responsive element binding protein signature 125 141 IPR001471 GO:0003700|GO:0006355
Gso4g1999 324 CDD AP2 101 158 IPR001471 GO:0003700|GO:0006355
Gso4g1999 324 Pfam AP2 domain 102 151 IPR001471 GO:0003700|GO:0006355
Gso4g1999 324 MobiDBLite consensus disorder prediction 20 39 - -
Gso4g1999 324 MobiDBLite consensus disorder prediction 177 198 - -
Gso4g1999 324 ProSiteProfiles AP2/ERF domain profile. 102 159 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1999 Gso-Chr4 50347937 50349714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1999 7 206 AP2-EREBP Transcription Factor Family AT4G27950 49.763 7.78e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso4g1999 AP2 8.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1999 - - gmx:100811972 646.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1999 4 50347937 50349714 Gso6g1059 6 10265374 10267351 GST