Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1997 ATGGACGATAGCTTATGCGATATTTTCGATGACAAAGAGTTTGGGAGCGAACACTTTGGTGGGGACGATCTCTTTGCCATTTTGGAGAGCCTAGAATCGGACTTCACCGACTTCCCTCCTCCCATTAACGAAGAAGCTGTTGTTGCTGCTGTCTCCAAAGACAATAACGAGGATGTCTCAAGATTGGTGTCTCAAAAGTCAACCTCTTCGAGTGCTCCACTTGATTCCGAAACTGAGCTTGAAACCTCTTCCAAAACCAAGAGGCAGAAGCTTACTCCTACTACTCCAGAGGAAGCTAACCCAGATGGACAACAAAAGATGTCTCATATTACTGTTGAACGCAACAGGAGAAAGCAAATGAATGAACACTTGACCGTGTTGAGGTCGCTTATGCCTTGCTTTTATGTCAAAAGGGGAGATCAAGCATCGATAATTGGAGGAGTGGTTGATTACATCAGCGAGTTGCAGCAGGTGCTCCAAGCCCTAGAGGCCAAGAAGCAAAGAAAAGTCTACAGCGAAGTCCTGAGCCCTAGGCTCGTTTCAAGCCCAAGGCCTTCACCACTGAGTCCTCGGAAGCCCCCTTTAAGCCCGAGACTGAACTTGCCAATTAGCCCAAGAACTCCACAACCAGGAAGCCCTTACAGGCCAAGGTTGCAGGCGCAGCAAGGCTACAACAACATCATTTCACCAACCATGTCCAACGTCTCTCTCGACCCTTCTCCCACTTCTTCTGCCAACTCCTCCATCAACGACAACATCAACGAGCTTGTTGCAAACTCCAAGTCCCCCACTGCTGACGTGGAGGTCAAGTTTTCAGGTCCTCACGTTCTTCTCAAAACGGTGTCTCAACGAATTCCAGGGCAGGCTATGAAGATTATAACGGCACTTGAAGATCTTGCGCTCGAAATCGTTCATGTCAACATTAACTGTGCTGCGGATGATACCATGCTAAACTCATTCACTATCAAGATTGGAATTGAATGCCAACTCAGTGCCGAAGAACTCGCTCAACAAATCCAGCAAACATTCTGCTAA 1035 0.4754 MDDSLCDIFDDKEFGSEHFGGDDLFAILESLESDFTDFPPPINEEAVVAAVSKDNNEDVSRLVSQKSTSSSAPLDSETELETSSKTKRQKLTPTTPEEANPDGQQKMSHITVERNRRKQMNEHLTVLRSLMPCFYVKRGDQASIIGGVVDYISELQQVLQALEAKKQRKVYSEVLSPRLVSSPRPSPLSPRKPPLSPRLNLPISPRTPQPGSPYRPRLQAQQGYNNIISPTMSNVSLDPSPTSSANSSINDNINELVANSKSPTADVEVKFSGPHVLLKTVSQRIPGQAMKIITALEDLALEIVHVNINCAADDTMLNSFTIKIGIECQLSAEELAQQIQQTFC* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1997 344 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 104 155 IPR011598 GO:0046983
Gso4g1997 344 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 103 178 IPR036638 GO:0046983
Gso4g1997 344 MobiDBLite consensus disorder prediction 87 108 - -
Gso4g1997 344 MobiDBLite consensus disorder prediction 183 212 - -
Gso4g1997 344 Gene3D - 97 177 IPR036638 GO:0046983
Gso4g1997 344 SMART finulus 110 161 IPR011598 GO:0046983
Gso4g1997 344 Pfam Helix-loop-helix DNA-binding domain 105 156 IPR011598 GO:0046983
Gso4g1997 344 MobiDBLite consensus disorder prediction 229 249 - -
Gso4g1997 344 CDD bHLH_AtFAMA_like 107 178 - -
Gso4g1997 344 MobiDBLite consensus disorder prediction 57 79 - -
Gso4g1997 344 MobiDBLite consensus disorder prediction 53 108 - -
Gso4g1997 344 MobiDBLite consensus disorder prediction 177 217 - -
Gso4g1997 344 PANTHER - 1 344 - -
Gso4g1997 344 PANTHER TRANSCRIPTION FACTOR FAMA 1 344 IPR044283 GO:0003700|GO:0010052
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1997 Gso-Chr4 50308896 50313683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1997 1 324 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 52.958 3.07e-96 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso4g1997 HLH 2.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1997 K20558 - gmx:100777437 632.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1997 4 50308896 50313683 Gso6g1061 6 10314530 10319349 GST