Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1996 ATGGACAACATGGGTGACCCAAAGAGCATCATACATGAGCTGCTACAAGGTTTGGAATTGGCAAGGCAACTCCAAGTGTATCTCCACCTGCCAACTTCGTCCCAAGAAACACGTGACCTACTGATCCAGAAGATCATATCAACATTTGAAAAAGCACTTGAAATGGTAAATTGTAAAGGGCCAGTGCCAGCGGGTGAGTCATCACATTATCCCCTAGGGGCTGCATTAATCCGAGTGTCAGATTCACCTTTGAGCAGTAGTCCCCGCAGTGAAGACTCTGATAGAGATTTCAAGGACCAGGACCCCAATGCTTTCAAAAAGAGAAACACTTTGCCAAGATGGACAAAACATATTCGAGTTACCCCAGGAATGGGGGTGGAAGGGCCTCTTGACGATGGATATAGTTGGAGAAAATATGGCCAGAAAGACATCCTTGGAGCCTTGTACCCGAGGGGCTATTACAGATGTACCCACAGAAATGTTCAAGGCTGCATGGCAACAAAGCAAGTGCAAAGATCCGATGAAGACCCCACCATTTTCGAAATCACTTACCGAGGAAAACACACCTGCACAATGGCCAACAACGTGGGTTCTTCTTCATCACCAATTCCACCAGAAAACCAAGAACCAAGTTTGAACAACACAAATCCTCAGCAGCAGAATATCTTGCAAAACCTTGAACAACAACAAAGCGACCTACTTTTGAGCCTGCGGAAAGGGTTGAGAGTCCAAACAGAGAACCTAGATTCCCCTGACCAACAATCATTGGTTCCGTTCCGTTTCCCTTTGTCCACAAACATCAAAATTGAAAGCCAAGTTTTCCCTTCCCCTGTGCTTGAAAACTTTATTAGTTCTCCTTCTTATATGTCCTCTGCTGCTTCAGGAATAAGTCACTTTTCAGTGTCTCCAAGTGGGGTGAACAGCTTTGGAGGGAACCCAAATTTGGCAAATTCTGAGTCTCAGATCAATGACATGATCCCAGCCACTACTACTTCAGCTCCAAACTCATCAACCGTTGGCTTAGAGTTCCCTTTTGACCAGTTTGAATTCGATGGCCAGAACTTCACATTCGATAACCCTCCATTTTTCTCTTGA 1095 0.4511 MDNMGDPKSIIHELLQGLELARQLQVYLHLPTSSQETRDLLIQKIISTFEKALEMVNCKGPVPAGESSHYPLGAALIRVSDSPLSSSPRSEDSDRDFKDQDPNAFKKRNTLPRWTKHIRVTPGMGVEGPLDDGYSWRKYGQKDILGALYPRGYYRCTHRNVQGCMATKQVQRSDEDPTIFEITYRGKHTCTMANNVGSSSSPIPPENQEPSLNNTNPQQQNILQNLEQQQSDLLLSLRKGLRVQTENLDSPDQQSLVPFRFPLSTNIKIESQVFPSPVLENFISSPSYMSSAASGISHFSVSPSGVNSFGGNPNLANSESQINDMIPATTTSAPNSSTVGLEFPFDQFEFDGQNFTFDNPPFFS* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1996 364 MobiDBLite consensus disorder prediction 194 217 - -
Gso4g1996 364 MobiDBLite consensus disorder prediction 81 110 - -
Gso4g1996 364 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 360 IPR044810 GO:0003700
Gso4g1996 364 Gene3D WRKY domain 124 193 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso4g1996 364 ProSiteProfiles WRKY domain profile. 125 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso4g1996 364 MobiDBLite consensus disorder prediction 88 106 - -
Gso4g1996 364 Pfam WRKY DNA -binding domain 131 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso4g1996 364 SUPERFAMILY WRKY DNA-binding domain 129 192 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso4g1996 364 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED 1 360 - -
Gso4g1996 364 SMART WRKY_cls 130 192 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1996 Gso-Chr4 50302035 50304503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1996 8 210 WRKY Transcription Factor Family AT5G24110 45.854 6.07e-52 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso4g1996 WRKY 6.6e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1996 - - gmx:100776906 677.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1996 4 50302035 50304503 Gso6g1062 6 10322958 10325226 GST