Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1992 ATGAAATATTTATTTCTTCTCCTTGTCACTTTCAAGATTATGAAGAGGAAGTTCACACAGCTACGGGAGTCTATGGGGTTTCAAACATCGCATAGCACTAAACGGATACCACAGCCAATTTTCAAAGCAAAGGAGGACTTAATTGATGCACATGAAAACTCATTAATTCGAAGGACTACACTGAACTTGACTGATCATACCCAAACCAATTCCATGTTCACTCTCTCTGGCTATGATTCATGGGTGGTAAGGCACCCTTCTGCATTGAACTCGTTTGATAGGTTGATGAAAGCCGCCAGTGGGAAGAGGATCATCGTTTTTTTGGACTACGATGGTACCTTATCACCAATTGTTAATGACCCTGATCGTGCTTTCATGTCTGATGAGATGCGTGCAGCTGTATATGAAGTTGCTACTTATTTTCCAACAGCAATAATTAGTGGAAGAAGCAGAGATAAGGTAAAAGGTTTCGTGAAGTTAAATAATTTATATTATGCTGGGAGCCATGGCATGGACATAATGGCACCATCAATGGCAGTTACATCTTCTGACGGCAAGCATTTTGACATTGCCCGTAACACAAATGGCACTGAAGTTCCCTTTCAACCTGCGAAGAAGTTTTTGCCGGCAATTGGAGAGATAATAAGAGTACTAAAGAATGAAGTAAAGGAAATAAAAGGAGCAATGGTAGAGGACAACGGATTCTGCCTCTCTGTACATTTCCGACAGGTCCAAGAAAAGGATTATGATGTTTTGGAAGCGAAAGTGAAGTCTGTGCTTGAAAATAATCCAGAATTTTGCCTAACAGAGGGTAAAAAGGTTATGGAAATAAGGCCATCTATAAAGTGGAACAAAGGAAATGCTGTAGAATATTTTCTTGACACATTAGGATTAAGCAGTTGCAATGATATCCTTCCAGTGTATATTGGCGATGATAGAACTGATGAAGACGCTTTTAAGGTCATACAGAGTAGAGAGCAAGGTTATCCAATTATAGTGTCTTCAATTCCAAGAGAAACTAACGCTTTATACTCTTTGCGTGACCCATCTGAAGTACTAATCTTTTTGTCACGGTTGGCAAAATGGAGGAAAACCTCTTACTAA 1104 0.3949 MKYLFLLLVTFKIMKRKFTQLRESMGFQTSHSTKRIPQPIFKAKEDLIDAHENSLIRRTTLNLTDHTQTNSMFTLSGYDSWVVRHPSALNSFDRLMKAASGKRIIVFLDYDGTLSPIVNDPDRAFMSDEMRAAVYEVATYFPTAIISGRSRDKVKGFVKLNNLYYAGSHGMDIMAPSMAVTSSDGKHFDIARNTNGTEVPFQPAKKFLPAIGEIIRVLKNEVKEIKGAMVEDNGFCLSVHFRQVQEKDYDVLEAKVKSVLENNPEFCLTEGKKVMEIRPSIKWNKGNAVEYFLDTLGLSSCNDILPVYIGDDRTDEDAFKVIQSREQGYPIIVSSIPRETNALYSLRDPSEVLIFLSRLAKWRKTSY* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1992 367 Coils Coil 242 262 - -
Gso4g1992 367 Gene3D - 194 367 IPR023214 -
Gso4g1992 367 Gene3D - 104 193 IPR023214 -
Gso4g1992 367 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 105 322 IPR006379 -
Gso4g1992 367 SUPERFAMILY HAD-like 105 363 IPR036412 -
Gso4g1992 367 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 53 366 - -
Gso4g1992 367 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 53 366 IPR044651 GO:0004805|GO:0005992
Gso4g1992 367 CDD HAD_TPP 106 352 - -
Gso4g1992 367 TIGRFAM T6PP: trehalose-phosphatase 101 361 IPR003337 GO:0003824|GO:0005992
Gso4g1992 367 Pfam Trehalose-phosphatase 107 350 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1992 Gso-Chr4 50244901 50254333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1992 102 360 Trehalose Biosynthesis Gene Families AT1G70290 26.545 5.71e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1992 K01087 - gmx:100819120 732.635