Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1980 ATGATTATTAAGCGGAATTTGAAATCCCAAATGCCGAGTCTGAAACGGGTCAAACTCGGTGACTCGGTGGGCGAGGATGATGAGTATTCTTATGCTCGTAAGAAGAGAAAGACCAACAGTTACTACCCTTTGAACCTTCTCGGCGACGTGGCCGCCGGCGTGATTCCGGTGAGTTTTCACGGGCTGCTCGGCGCCGGCGTGGCGGAGAAGAGGTTCTCTGCGTCGTGGTGCAACGGAGTGGAATCGAACGCGAAAAACGACATCGTGGAAGTGAAGAAGAAGAACGAGGTTCAGCGGCCACCTCTGGTTAGGACTTCAAGGGGGAGAGTTCAGGTTCTCCCTTCGCGGTTCAATGATTCGGTTATTGATAATTGGAGGAAGGAGAGCAAGAGTAGTGGTGGTTTGCGTGATTGTGATTACGACGAAGAATTTGAATGCAAGAAGGAGAAGTTCAGCTTCAAGGCACCCAAGGTTTGCAATAATCAGAAGAAAGGAAAAAGCGAGGAGAAAACGGGTTCTAAGGCTCGTAAGTACTCGGCATTGTGTAATGGTTTTGGGAGGAGCAAGTGTTCGAGTTTTCGTGGTGATGGTGCATTGGCCTTGAGGCGCGGTGGGGTGGCAGTTGAAGAGGATGAGAGGAGAAGTTTTTTGGAGGTGGAAGAGGTTGGTTTGATGGGTTTGAAGGAGAAAAGAAATGGGTTGTTTGGGCCAGAAGATTTTTATGCAGGTGATATAGTGTGGGCCAAAGCTGGGAGAAAGGAACCTTTTTGGCCAGCCATTGTTATTGATCCTATGACTCAGGCACCCGAGTTAGTTCTCAGGTCTTGTATAGCCGATGCAGCTTGTGTAATGTTTTTAGGGTATGCGGGGAATGAGAATCAAAGGGACTATGCATGGGTGAAGCATGGGATGATTTTTCCATTTATGGATTATGTGGACAGGTTTCAGGGGCAGTCTGAGTTGAGTTACTATAATCCTTCTGACTTCCAAATGGCAATAGAGGAGGCATTTTTGGCCGAGAGGGGTTTCACAGAGAAGTTGATAGCAGATATAAATACAGCAGCTACTAACAATGGTTATGATGATTCTATTCTGAAAGCCTTTCAGGAGGTCAGTGGTACAAACCAATATGCAGGATATCATTTTCTGAACCAGGATTTATTTGATAAGAAAGAAACACGGCCCTGTGAAGCCTGTGGGTTGAGCCTTCCTTACAAGATGTTAAAGAAAACAAAAGATTCAAGTCCTGGTGGCCAATTCCTATGTAAAACATGTGCTAGGTTAACAAAATCAAAACATTATTGTGGCATATGCAAGAAGGTTTGGAATCATTCAGATAGTGGAAGTTGGGTGCGCTGCGATGGATGCAAAGTGTGGGTGCATGCAGAATGTGACAAAATTTGTAGCAACCTTTTCAAGAATCTTGAAGGCACTGATTATTACTGCCCTACTTGCAAAGCCAAGTTTGATTTTGAGTTATCTGATTCAGAAAAACCACAGCCAAAAGTCAAGTGGAGCAAAAACAATGGGCAGCTAGTGCTTCCAAATAGGGTCACTGTTCTCTGCAATGGTGTTGAAGGCATATATTTTCCAAGCCTTCATTTAGTTGTGTGCAAGTGTGGGTTTTGCAGGACAGAAAAGCAAGCACTTAGTGAATGGGAACGACACACAGGTTCCAAATTAAGAAATTGGAGAACAAGTATTAGGGTGAAAGATTCTATGCTACCTCTGGAACAATGGATGCTGCAGTTGGCAGAATTTCATGCTACTGCTCAGGTTCCCACCAAACCTAAGAAACCTTCTCTGAAAGAAAGAAAGCATAAGTTGCTTACCTTCTTGCAAGAGAAGTATGAACCTGTTCATGCTAAGTGGACTACAGAACGCTGTGCTGTTTGTAGATGGGTTGAAGACTGGGACTACAACAAAATTATCATTTGCAACAGATGTCAAATAGCAGTTCATCAAGAATGCTATGGAGCAAGAAATGTCCGAGATTTTACATCTTGGGTTTGTAAAGCTTGCGAAAGACCTGACATCAAGCGGGAGTGTTGTCTTTGTCCTGTAAAAGGTGGTGCTTTAAAGCCGACAGATGTTGACACATTGTGGGTTCATGTCACTTGTGCTTGGTTTCGACCTGAAGTCTCTTTTGCTAGTGATGAGAAGATGGAGCCTGCTTTGGGTATTCTAAGTATTCCATCAAATTCTTTTGTAAAGATTTGTGTTATTTGCAAGCAAATTCATGGTTCGTGTACACAATGTTGCAAGTGTTCTACTTATTTCCATGCCATGTGTGCTTCAAGGGCTGGTTATCGAATGGAGTTGCATTGTTTGGAGAAAAATGGCAAGCAGACAACAAAAATGGTCTCTTATTGTGCTTACCACAGGGCTCCCAATCCAGATACAGTTTTGATTATGCAAACCCCTCTTGGGGTCATTTCAACTAAAAGCCTTCTCCAAACTAAGAAAAAAACTGGTTCGAGGTTAATCTCATCTAGCAGAAAAAAGCAAGATGACTCTCCTGTTGATAACACTGAGCATGAGCCATTTTCTGCTGCTAGGTGCCGTATCTTTCAAAGAACAAACCATACCAAAAAGAGAGCAGCAGATGAAGCCGTTTCTCATCGAGTGAGGGGTCCCTATCATCATCCTTTAGATGCAATAGAGAGTTTAAATACACACAGAGTAGTACATGAACCTCAGGCATTTTCTTCTTTCAGAGAACGCCTATACCACTTGCAGAGAACCGAAAATGAACGGGTTTGCTTTGGTAGATCAGGCATACATGAATGGGGCCTCTTTGCACGAAGAAATATTCAAGAAGGAGACATGGTTCTTGAATATCGTGGTGAACAAGTGAGACGCAGCATTGCAGATTTGAGGGAGGCACGCTATAGATTAGAAGGGAAAGACTGCTACCTGTTTAAGATTAGTGAAGAAGTGGTGGTAGATGCCACTGATAAAGGGAATATAGCTCGGCTGATTAATCATTCTTGTATGCCAAATTGCTATGCAAGGATCATGAGTGTCGGTGATGAGGAGAGCCGGATTGTACTCATCGCTAAGACTAACGTGGCTGCCGGTGATGAGTTAACGTATGACTACTTGTTTGATCCTGATGAGCCAGAGGAAAACAAAGTCCCATGCCTATGTAAAGCTCCAAACTGCCGGAAATTCATGAATTAG 3183 0.4361 MIIKRNLKSQMPSLKRVKLGDSVGEDDEYSYARKKRKTNSYYPLNLLGDVAAGVIPVSFHGLLGAGVAEKRFSASWCNGVESNAKNDIVEVKKKNEVQRPPLVRTSRGRVQVLPSRFNDSVIDNWRKESKSSGGLRDCDYDEEFECKKEKFSFKAPKVCNNQKKGKSEEKTGSKARKYSALCNGFGRSKCSSFRGDGALALRRGGVAVEEDERRSFLEVEEVGLMGLKEKRNGLFGPEDFYAGDIVWAKAGRKEPFWPAIVIDPMTQAPELVLRSCIADAACVMFLGYAGNENQRDYAWVKHGMIFPFMDYVDRFQGQSELSYYNPSDFQMAIEEAFLAERGFTEKLIADINTAATNNGYDDSILKAFQEVSGTNQYAGYHFLNQDLFDKKETRPCEACGLSLPYKMLKKTKDSSPGGQFLCKTCARLTKSKHYCGICKKVWNHSDSGSWVRCDGCKVWVHAECDKICSNLFKNLEGTDYYCPTCKAKFDFELSDSEKPQPKVKWSKNNGQLVLPNRVTVLCNGVEGIYFPSLHLVVCKCGFCRTEKQALSEWERHTGSKLRNWRTSIRVKDSMLPLEQWMLQLAEFHATAQVPTKPKKPSLKERKHKLLTFLQEKYEPVHAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVRDFTSWVCKACERPDIKRECCLCPVKGGALKPTDVDTLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHCLEKNGKQTTKMVSYCAYHRAPNPDTVLIMQTPLGVISTKSLLQTKKKTGSRLISSSRKKQDDSPVDNTEHEPFSAARCRIFQRTNHTKKRAADEAVSHRVRGPYHHPLDAIESLNTHRVVHEPQAFSSFRERLYHLQRTENERVCFGRSGIHEWGLFARRNIQEGDMVLEYRGEQVRRSIADLREARYRLEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDEESRIVLIAKTNVAAGDELTYDYLFDPDEPEENKVPCLCKAPNCRKFMN* 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1980 1060 CDD PHD_TCF19_like 435 485 - -
Gso4g1980 1060 CDD PHD_ATX3_4_5_like 628 674 IPR042011 -
Gso4g1980 1060 SMART PostSET_3 1044 1060 IPR003616 -
Gso4g1980 1060 CDD SET_SETD1-like 905 1056 - -
Gso4g1980 1060 SMART set_7 918 1041 IPR001214 GO:0005515
Gso4g1980 1060 Pfam PHD-finger 434 487 IPR019787 -
Gso4g1980 1060 Pfam PWWP domain 243 337 IPR000313 -
Gso4g1980 1060 Gene3D SET domain 816 1060 IPR046341 -
Gso4g1980 1060 MobiDBLite consensus disorder prediction 830 844 - -
Gso4g1980 1060 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1060 IPR025780 -
Gso4g1980 1060 ProSitePatterns Zinc finger PHD-type signature. 629 674 IPR019786 -
Gso4g1980 1060 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 429 489 IPR013083 -
Gso4g1980 1060 SUPERFAMILY Tudor/PWWP/MBT 235 342 - -
Gso4g1980 1060 SUPERFAMILY SET domain 908 1060 IPR046341 -
Gso4g1980 1060 ProSiteProfiles PWWP domain profile. 242 311 IPR000313 -
Gso4g1980 1060 ProSiteProfiles Post-SET domain profile. 1044 1060 IPR003616 -
Gso4g1980 1060 PANTHER PHD FINGER PROTEINS 1 1060 - -
Gso4g1980 1060 Pfam PHD-zinc-finger like domain 682 794 - -
Gso4g1980 1060 ProSiteProfiles Extended PHD (ePHD) domain profile. 680 795 IPR034732 -
Gso4g1980 1060 CDD ePHD_ATX3_4_5_like 683 794 IPR041955 -
Gso4g1980 1060 SMART PHD_3 434 486 IPR001965 -
Gso4g1980 1060 SMART PHD_3 739 795 IPR001965 -
Gso4g1980 1060 SMART PHD_3 628 675 IPR001965 -
Gso4g1980 1060 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 678 797 IPR013083 -
Gso4g1980 1060 Pfam PHD-finger 641 675 - -
Gso4g1980 1060 SUPERFAMILY FYVE/PHD zinc finger 432 489 IPR011011 -
Gso4g1980 1060 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 615 677 IPR013083 -
Gso4g1980 1060 ProSiteProfiles SET domain profile. 918 1035 IPR001214 GO:0005515
Gso4g1980 1060 ProSiteProfiles Zinc finger PHD-type profile. 626 677 IPR019787 -
Gso4g1980 1060 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 1 1060 - -
Gso4g1980 1060 Gene3D - 237 343 - -
Gso4g1980 1060 MobiDBLite consensus disorder prediction 823 847 - -
Gso4g1980 1060 Pfam SET domain 930 1034 IPR001214 GO:0005515
Gso4g1980 1060 ProSiteProfiles Zinc finger PHD-type profile. 432 488 IPR019787 -
Gso4g1980 1060 SUPERFAMILY FYVE/PHD zinc finger 626 691 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1980 Gso-Chr4 50090433 50103555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1980 629 794 C2H2 Transcription Factor Family AT3G14740 34.286 2.41e-19 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso4g1980 zf-HC5HC2H_2 2.8e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1980 - - gmx:100808761 2176.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1980 4 50090433 50103555 Gso6g1085 6 10568008 10580119 GST