Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1977 ATGGAGTACGGAAGGTTAGGACCCTCTGATCCTGGTGGCTCCTCGCGCCTCAACCCTCCGAGATCTTCCGGGAGGAAAAACATTGTGTTTCTGTCACTCTTTGCTGTCTTATTAATAGCCGCGTCCGCTGTTACTGCAGTTGCCGTCCGCTCTCGCACTAAAAATACCGGAGGGGACGGAACTAGTCTCGGCAAGTTCACACAGGCCATTTCACGCACGTGCAGCAAGACACGCTTTAAGATGTTGTGCATGAAATCATTACTGGACTTCCCGGGATCTCAAGGAGCATCCGAGAAGGACCTCGTCCACATTTCCTTCAACGTCACGCTGCAGCACTTCTCCAAGGCGCTCTACTCTTCCGCCACCATCTCCTACACCGCCATGGATCCCCGCGTCCGCGCCGCCTACCACGACTGCCTCGAGCTCCTCGACGACTCCGTCGACGCGCTCGCCCGCTCCCTCAACACAGTCTCCGTCGGCGCCGTCGGCTCCGCCAACGACGACGTGCTGACGTGGCTCAGCGCTGCGCTCACCAACCAGGACACCTGCGCGGAGGGCTTCGCCGACGCCGCCGGCACAGTCAAGGACCAGATGGCCAACAACCTCAAGGACTTGTCCGAGCTCGTGAGCAATTGTCTCGCGATATTCTCCGGCGCAGGCGCCGGCGACGACTTCGCCGGCGTCCCTATTCAGAATAGGAGGCGGTTGATGGCAATGCGAGAGGATAATTTTCCGACATGGCTGAATGGGCGAGATAGGAGATTGCTGAGCTTGCCTCTGTCGCAGATACAAGCAGATATTGTGGTTTCCAAAGACGGTAACGGAACCGTTAAGACCATCGCCGAGGCCATTAAGAAGGTGCCGGAATATAGCTCACGCCGCATCATTATCTACATCAGGGCAGGAAGGTATGAAGAGGACAATTTAAAGTTGGGGAGGAAGAAAACAAATGTGATGTTCATAGGGGACGGGAAGGGCAAAACCGTCATCACGGGCGGAAGAAATTATTACCAGAACCTGACCACATTTCACACCGCTTCCTTCGCTGCTAGTGGTTCTGGTTTCATCGCAAAAGACATGACGTTCGAGAACTACGCCGGGCCGGGGAGGCACCAGGCGGTGGCCCTCCGCGTCGGAGCAGACCACGCGGTGGTGTACCGCTGCAACATCATCGGATACCAAGACACAATGTATGTCCACTCGAACCGTCAATTTTACCGAGAATGCGACATTTACGGAACCGTGGACTTCATATTCGGCAACGCCGCGGTGGTGTTCCAAAACTGCACCCTCTGGGCCCGAAAGCCCATGGCCCAACAGAAGAACACCATCACGGCCCAAAACCGAAAGGACCCGAATCAGAACACGGGCATTTCGATCCACAATTGTAGGATCATGGCCACGCCGGATCTTGAAGCATCCAAGGGTAGCTACCCCACTTATCTGGGACGTCCTTGGAAACTTTACGCTAGAACCGTCTTCATGCTGTCCTACATAGGGGACCACGTGCATCCACGTGGCTGGCTCGAGTGGAACACTTCCTCCTTTGCTTTAGACACGTGTTATTATGGTGAATACATGAATTATGGGCCGGGTTCAGCTCTGGGCCAACGGGTTAATTGGGCCGGCTATCGGGCCATCAATTCGACGGTGGAAGCGTCTAGATTCACGGTGGGCCAGTTTATATCGGGCTCGTCCTGGTTGCCCTCTACCGGAGTGGCGTTCATTGCTGGGTTATCAACGTAA 1746 0.5538 MEYGRLGPSDPGGSSRLNPPRSSGRKNIVFLSLFAVLLIAASAVTAVAVRSRTKNTGGDGTSLGKFTQAISRTCSKTRFKMLCMKSLLDFPGSQGASEKDLVHISFNVTLQHFSKALYSSATISYTAMDPRVRAAYHDCLELLDDSVDALARSLNTVSVGAVGSANDDVLTWLSAALTNQDTCAEGFADAAGTVKDQMANNLKDLSELVSNCLAIFSGAGAGDDFAGVPIQNRRRLMAMREDNFPTWLNGRDRRLLSLPLSQIQADIVVSKDGNGTVKTIAEAIKKVPEYSSRRIIIYIRAGRYEEDNLKLGRKKTNVMFIGDGKGKTVITGGRNYYQNLTTFHTASFAASGSGFIAKDMTFENYAGPGRHQAVALRVGADHAVVYRCNIIGYQDTMYVHSNRQFYRECDIYGTVDFIFGNAAVVFQNCTLWARKPMAQQKNTITAQNRKDPNQNTGISIHNCRIMATPDLEASKGSYPTYLGRPWKLYARTVFMLSYIGDHVHPRGWLEWNTSSFALDTCYYGEYMNYGPGSALGQRVNWAGYRAINSTVEASRFTVGQFISGSSWLPSTGVAFIAGLST* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1977 581 Gene3D Invertase/pectin methylesterase inhibitor family protein 67 218 IPR035513 -
Gso4g1977 581 PANTHER PECTINESTERASE 20 579 - -
Gso4g1977 581 Pfam Plant invertase/pectin methylesterase inhibitor 69 215 IPR006501 GO:0004857
Gso4g1977 581 SMART PMEI_2 65 215 IPR006501 GO:0004857
Gso4g1977 581 Pfam Pectinesterase 266 564 IPR000070 GO:0030599|GO:0042545
Gso4g1977 581 Gene3D - 260 579 IPR012334 -
Gso4g1977 581 TIGRFAM PME_inhib: pectinesterase inhibitor domain 63 217 IPR006501 GO:0004857
Gso4g1977 581 ProSitePatterns Pectinesterase signature 2. 411 420 IPR033131 -
Gso4g1977 581 CDD PMEI-like_3 74 217 - -
Gso4g1977 581 MobiDBLite consensus disorder prediction 1 21 - -
Gso4g1977 581 SUPERFAMILY Pectin lyase-like 262 578 IPR011050 -
Gso4g1977 581 PANTHER PECTINESTERASE 20 579 - -
Gso4g1977 581 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 68 217 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1977 Gso-Chr4 50032531 50036720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1977 1 580 Carbohydrate Esterase AT5G53370 65.195 0.0 794
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1977 - - gmx:100808236 1123.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1977 4 50032531 50036720 Gso6g1089 6 10638892 10643484 GST