Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1954 ATGGGTAGCTTCAGCGAAGACGAGGAATGTCGGTTTTTCGATGCTCAAGAGGATGTTGTGTCCATTCCAGATGAAGGGGTATCCAATGGTTTTGATTATGAAGTGTGGATTCGGAGTCCAAGGAGTGTGAGAGAGCGTAGGGGCAAGTTTATGAAGAGGATGGGACTGAGTAGTGTGGATTTGGTTGCCCTTGAAAATGAAAATTCAGTAGATGTGCGTAGTGTTGAATGTGAAGAGGAGGTTATGGACAGAGTAAATGTTAACAGTGGGGCCGTGACCCGAAATTGTGTTATGGAAGAGGAATTCTGTTCAAGCAGGACATCAATGTCTTGTTGGCATAGGGAGAATTCTTCAGGGGAGTTTGGTATGGTGGATAGTTCGCCGTGTCATGATGGAAATTTGGAGGGTAATGTGGATCAGGAGGGGTTGCAGTGTCGGGAGATGAGTGAGGGAAGAGATCTGGATTCAGATCGGTCGGTGGTTGCGGAGGAATTTAAGGAATCAGAAAATGCCTTAAGGGGAACGAATGGTAATGTTACTGTTGGGAAGATGAACAAGTATAGAAAGGGTTGGCTCAGAAGATTGCGGTCGATAACGTGCATGGTTAATAGGCAAGAGGAAGGTGATAATGGGAGAGAAGAAGGTCTTGGTGAAATGTCAGGAACTTGTAGGCTTCAGAAAGTTAAGGTCCGCCAGTCCAAGAAGCAAATGAAGGAACTTTCGGCTCTTTACATGAGGCAAGATATCCAAGCGCATGAAGGTTCGATTTTGACCATGAAGTTCAGTCCTGATGGGCAGTATCTTGCTAGTGGTGGTGAAGATGGGGTTGTGCGCTTGTGGCAAGTGGTTGAGGAGGATAGGTGTAATGAAGTTGACATTCCAGAAATTGACCCGTCCTGCATTTATTTTACTGTGAATAATCTCTCTGAATTGACACCACTGTTTATCGATAAAGAAAAAATAAGCAAACTGAAGAGCCTGAAAAAAACATCAGATTCAGCTTGCATTGTTTTTCCTCCTAAGATCTTCCGGTTGTTGGAGAAACCATTGCATGAGTTTCGGGGGCACAGAGGTGAAGTTTTGGATCTCTCTTGGTCAAGCAATAATTATCTTCTGTCATCTTCAGTTGACAAAACTGTTCGTCTATGGCAAGTGAATCATGACCGTTGCTTGAAAGTTTTCTCACACAGTAATTATGTGACGTGCATACAATTCAATCCCGTGGATGATAATTATTTCATTAGTGGATCTATAGATGGAAAAGTACGCATCTGGGCAATTCCTGATTGCCATGTTGTTGATTGGATTGATATCAAAGATATAGTAACTGCGGTATGCTATCGGCCTGATGGGCAGGGAGGGATCATTGGCTCCTTGGCTGGCAATTGCCGGTTTTATAATGTATCAGAGAATCGCTTGCAATTAGATTCCCAACTATGCTTAATTGGTAAAAAGAAACTTTCAGGCAGAGGGATAACTGGGTTTCAGTTTCTTCCACAAGATTCTAACAAAGTTATGGTCTCCTGTGCTGATTCACAAGTCAGAATCCTTGATGGGTTTAATGTGATTGGCAAGTACAAAAACCTTAGCACAGGGAGCCCAATGTGTGCATCATTGACTTCTGATGGGAAACATATTCTATCAGCATGTGAGGACTCTAACGTATATCTATGGAATGTTAGTCAAGAAGAGTCTAATCCTGTGAAAGCTAAGAAGATTACATCTTGTGAGCGTTTTTTCTCAAATGCGTCCATAGCAGTAACTTGGCATGGTTTGAAATCGCAAAATATTGAAATCCAACATCAACTGGATGCCTTGGATAAAAGATCATCTCAAGTTATACAACTCAGTCCTCCTGCTTCATTCTCCCTGAGTCAAGAGTTCTTCTTGGAGTCTTTTCCAAAGGGATCTGCAACTTGGCCAGAGGAGAAGCTTCCTGTTTCAAGCCCCAAGGCTAAAACATCAGTGATGCGTAAATCCGAGTACAAGTTCTTGAAATCTTCTTGCAAGAGTACCTCCTCTGCTCATGCATGGGGTATGGTCATTGTCACTGCTGGCTGGGATGGTAGGATAAAATCATTCCACAATTATGGGCTACCTATACTGGCTTGA 2112 0.429 MGSFSEDEECRFFDAQEDVVSIPDEGVSNGFDYEVWIRSPRSVRERRGKFMKRMGLSSVDLVALENENSVDVRSVECEEEVMDRVNVNSGAVTRNCVMEEEFCSSRTSMSCWHRENSSGEFGMVDSSPCHDGNLEGNVDQEGLQCREMSEGRDLDSDRSVVAEEFKESENALRGTNGNVTVGKMNKYRKGWLRRLRSITCMVNRQEEGDNGREEGLGEMSGTCRLQKVKVRQSKKQMKELSALYMRQDIQAHEGSILTMKFSPDGQYLASGGEDGVVRLWQVVEEDRCNEVDIPEIDPSCIYFTVNNLSELTPLFIDKEKISKLKSLKKTSDSACIVFPPKIFRLLEKPLHEFRGHRGEVLDLSWSSNNYLLSSSVDKTVRLWQVNHDRCLKVFSHSNYVTCIQFNPVDDNYFISGSIDGKVRIWAIPDCHVVDWIDIKDIVTAVCYRPDGQGGIIGSLAGNCRFYNVSENRLQLDSQLCLIGKKKLSGRGITGFQFLPQDSNKVMVSCADSQVRILDGFNVIGKYKNLSTGSPMCASLTSDGKHILSACEDSNVYLWNVSQEESNPVKAKKITSCERFFSNASIAVTWHGLKSQNIEIQHQLDALDKRSSQVIQLSPPASFSLSQEFFLESFPKGSATWPEEKLPVSSPKAKTSVMRKSEYKFLKSSCKSTSSAHAWGMVIVTAGWDGRIKSFHNYGLPILA* 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1954 703 ProSiteProfiles Trp-Asp (WD) repeats profile. 353 393 IPR001680 GO:0005515
Gso4g1954 703 SUPERFAMILY WD40 repeat-like 244 693 IPR036322 GO:0005515
Gso4g1954 703 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 6 701 - -
Gso4g1954 703 Pfam WD domain, G-beta repeat 389 425 IPR001680 GO:0005515
Gso4g1954 703 Pfam WD domain, G-beta repeat 348 383 IPR001680 GO:0005515
Gso4g1954 703 Pfam WD domain, G-beta repeat 250 280 IPR001680 GO:0005515
Gso4g1954 703 Gene3D - 230 597 IPR015943 GO:0005515
Gso4g1954 703 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 393 425 - -
Gso4g1954 703 SMART WD40_4 387 426 IPR001680 GO:0005515
Gso4g1954 703 SMART WD40_4 519 559 IPR001680 GO:0005515
Gso4g1954 703 SMART WD40_4 478 518 IPR001680 GO:0005515
Gso4g1954 703 SMART WD40_4 658 695 IPR001680 GO:0005515
Gso4g1954 703 SMART WD40_4 242 281 IPR001680 GO:0005515
Gso4g1954 703 SMART WD40_4 429 467 IPR001680 GO:0005515
Gso4g1954 703 SMART WD40_4 346 384 IPR001680 GO:0005515
Gso4g1954 703 PRINTS G protein beta WD-40 repeat signature 268 282 IPR020472 -
Gso4g1954 703 PRINTS G protein beta WD-40 repeat signature 371 385 IPR020472 -
Gso4g1954 703 PRINTS G protein beta WD-40 repeat signature 413 427 IPR020472 -
Gso4g1954 703 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 353 386 - -
Gso4g1954 703 PANTHER WD REPEAT DOMAIN 44 6 701 IPR040324 -
Gso4g1954 703 ProSiteProfiles Trp-Asp (WD) repeats profile. 393 425 IPR001680 GO:0005515
Gso4g1954 703 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 249 282 - -
Gso4g1954 703 ProSiteProfiles Trp-Asp (WD) repeats profile. 249 282 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1954 Gso-Chr4 49816168 49821042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1954 249 417 U-box Gene Family AT2G33340 24.365 4.37e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1954 - - gmx:100807177 1393.64