Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1942 ATGGGAGGTTCATCGGAAACGAAGCTTATGCAAGACCTGTTGTTGTACGCGGCGAGCGCGGCGCTAAGTTGCTTGGTGTTGTTCGCCGGACTGAGACACCTGGACCCTAATCGCGAATCGTCGAAGAAGGCTCTCGAGCATAAGAAAGAGATTGCAAAGCGTCTCGGTCGCCCCCTCATTCAGACTAACCCTTACGAGGATGTAATAGCCTGTGACATTATAAATCCTGATCACATTGATGTGGAGTTCAACTCTATCGGGGGACTGGAGACAATCAAGCAAGCTTTGTTTGAGCTTGTTATTCTGCCTCTAAAAAGACCAGACTTGTTTTCGCACGGTAAGCTTCTTGGACCACAAAAGGGGGTCCTGTTGTATGGACCGCCCGGCACTGGAAAAACCATGCTTGCCAAAGCTATTGCCAAGGAGTCAGGAGCAGTTTTTATTAACGTGAGAATATCGAACTTGATGAGCAAGTGGTTTGGGGATGCCCAAAAGCTTGTTGCTGCTGTATTTAGCTTGGCTTATAAGCTTCAGCCTGCCATCATATTCATTGATGAAGTAGACAGTTTTTTGGGTCAGCGTCGTACAACAGATCACGAGGCTTTGTTAAACATGAAAACTGAATTCATGGCTCTGTGGGATGGATTTACAACAGATCAGAATGCTCAAGTTATGGTCCTTGCAGCAACTAATCGTCCTTCAGAACTTGATGAAGCAATTCTTCGGCGTCTTCCTCAAGCCTTTGAAATTGGAGTTCCAGACCAAAGGGAGAGGACTGAAATATTGAAAGTTGTCTTAAAGGGTGAGAGGGTTGAAGACAACATAGACTTTGGTCATATAGCTGGCTTGTGTGAGGGTTACACTGGTTCAGATCTATTTGATCTATGCAAGAAAGCTGCCTATTTTCCTATTAGAGAACTTCTGGATGAAGAAAAGAAAGGAAAACGATCTCCTGCACCTAGACCTTTGTCCCAGTTAGATTTGGAGAAGGCCCTTGCTACTTCACAGAAGACAAACGTTGCTGCTAGTGAATACAGTGGATTCAGCCTTCAGTCACCTTCAAGATGGACAGTGCCTGGTGAGTCAGAGTAA 1092 0.4542 MGGSSETKLMQDLLLYAASAALSCLVLFAGLRHLDPNRESSKKALEHKKEIAKRLGRPLIQTNPYEDVIACDIINPDHIDVEFNSIGGLETIKQALFELVILPLKRPDLFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTTDHEALLNMKTEFMALWDGFTTDQNAQVMVLAATNRPSELDEAILRRLPQAFEIGVPDQRERTEILKVVLKGERVEDNIDFGHIAGLCEGYTGSDLFDLCKKAAYFPIRELLDEEKKGKRSPAPRPLSQLDLEKALATSQKTNVAASEYSGFSLQSPSRWTVPGESE* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1942 363 CDD AAA 116 251 - -
Gso4g1942 363 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 310 IPR027417 -
Gso4g1942 363 Pfam AAA+ lid domain 274 310 IPR041569 -
Gso4g1942 363 Pfam ATPase family associated with various cellular activities (AAA) 122 251 IPR003959 GO:0005524|GO:0016887
Gso4g1942 363 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-LIKE 3 342 - -
Gso4g1942 363 SMART AAA_5 118 254 IPR003593 -
Gso4g1942 363 Gene3D - 80 338 IPR027417 -
Gso4g1942 363 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 3 342 - -
Gso4g1942 363 ProSitePatterns AAA-protein family signature. 224 243 IPR003960 GO:0005524|GO:0016887
Gso4g1942 363 Gene3D - 253 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1942 Gso-Chr4 49661434 49667766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1942 39 318 Calmodulin-binding Proteins AT3G56690 32.394 2.27e-38 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1942 K22530 - gmx:100796908 707.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1942 4 49661434 49667766 Gso6g1125 6 11011368 11016171 GST