Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1935 ATGATGGAGGGAGATGAGAATATTCAAGCATCATCAAAGGGAAAATATGTTGAAAGCTTCAACTGCTCGGAGGCACCAAGGAAGAAAAGCAAGAAGATAGAAAACAAGAGGAGGTTTAGTGATGAACAGATAAGATCACTAGAATGCATATTTGAGTCAGAGTCAAAGCTTGAGCCAAGGAAGAAGATGCAACTGGCTAGAGATCTTGGCCTGCAGCCTCGCCAAGTGGCTATATGGTTCCAAAACAGAAGGGCAAGGTGGAAATCAAAACGAATAGAGCAAGAGTACCGAAAACTCAAAGATGAATATGACAATTTAGCATCAAGGTTTGAGTCCCTAAAGAAAGAGAAGGACTCTTTGCAATTAGAGTTGCAGAAACTAAGTGATTTGTTGGAGGCATGTCAAGATGATGGAAGGGAAGACAAGGCTGGCAAAGAAAACAGCATAGAAGATGGTGGCTCAGGCAGTGGATACAGCAGTTGGAAGCCTGAAGCAAAACCAAGGTTTTCAAATGAGGGTTTGGAGGAGAGAATAGGTGTGTACTCAGATGATCAAAATGAGAATAGCATCATAAGGGGTGGTGAGAAATCTGAAGACAAAGGACACCAACTTCTCAGAATGGATGATCATGCAGAGATGCCATTGGCATCACTTGAAAAATGGTATAGTGGTGTGGACCCTAGTGGCATCTTGGACCAGTCATGTAGCAGTTCTCAATGGCTAGATTTCTGGACTTGA 738 0.4268 MMEGDENIQASSKGKYVESFNCSEAPRKKSKKIENKRRFSDEQIRSLECIFESESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKDEYDNLASRFESLKKEKDSLQLELQKLSDLLEACQDDGREDKAGKENSIEDGGSGSGYSSWKPEAKPRFSNEGLEERIGVYSDDQNENSIIRGGEKSEDKGHQLLRMDDHAEMPLASLEKWYSGVDPSGILDQSCSSSQWLDFWT* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1935 245 Coils Coil 82 137 - -
Gso4g1935 245 ProSiteProfiles 'Homeobox' domain profile. 30 90 IPR001356 GO:0003677
Gso4g1935 245 MobiDBLite consensus disorder prediction 168 182 - -
Gso4g1935 245 MobiDBLite consensus disorder prediction 137 201 - -
Gso4g1935 245 CDD homeodomain 36 91 IPR001356 GO:0003677
Gso4g1935 245 ProSitePatterns 'Homeobox' domain signature. 65 88 IPR017970 GO:0000981|GO:0006355
Gso4g1935 245 Pfam Homeobox associated leucine zipper 90 131 IPR003106 GO:0006355|GO:0043565
Gso4g1935 245 SUPERFAMILY Homeodomain-like 23 90 IPR009057 -
Gso4g1935 245 PRINTS Lambda-repressor HTH signature 61 70 IPR000047 GO:0003677
Gso4g1935 245 PRINTS Lambda-repressor HTH signature 70 86 IPR000047 GO:0003677
Gso4g1935 245 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 2 245 IPR045224 GO:0003700
Gso4g1935 245 SMART HOX_1 33 94 IPR001356 GO:0003677
Gso4g1935 245 Gene3D - 24 99 - -
Gso4g1935 245 Pfam Homeodomain 36 88 IPR001356 GO:0003677
Gso4g1935 245 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 2 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1935 Gso-Chr4 49604082 49605797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1935 17 245 Homeobox Transcription Factor Family AT2G46680 42.857 5.87e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso4g1935 Homeodomain 2.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1935 K09338 - gmx:100499926 477.633