Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1930 ATGGGTGAATTATTTGGCGTTGGGAAAAGAAGGGACATCATCAGCAACAACAACAGTGCTAGTAGTAGCGTTCTTGGGTTGGATGTGAAGGTGCAGAGCCCTGAAGTATTATTCCATAATAGGATGACCATGATGGGGCATCATAATCATCACCTCCATCCATTGTCATCCCCCTTTGATAATAATAACGATATTTCCTGTGCTGCTGGTGATGGCGATGGTGATGGTCCCACGACTTACATGTCTCTCACTAATCATATAAACCTTGTTAGTGGTGCTTCTGTTCTTGGTCCTGCTATTGATGGTGGCTGTGGTGCTGCTCCTGCTGCACCTGTAAGAACTTTGCAGCCTTTTCAAATTTCTTCTTATACTTCTCCCACCACCACTACCACAGCCTTCGAACCCTTTTCAGGTGTGATGGCGGCTTCATTGGGGTTTCCCTTCACAAGTGCACAATGGAGGGAGCTTGAAAGGCAGGCTATGATATACAAGTACATGATGGCTTCAGTTCCTGTTCCACCTGATCTCCTCATTCCTACTTCACTCACATCCTCTTCTCGCTCTTCCTGCATGGATGGTGGTTTCAATCTGAGGTTGGCAAATAGCACTGACCCTGAGCCAGGTAGGTGCAGAAGAACAGATGGAAAAAAATGGAGATGTTCAAGAGACGTGGCTCCTAACCACAAGTACTGCGAGCGCCATATGCATAGAGGCCGTCCCCGTTCAAGAAAGCCTGTGGAAGTTAACACCAACACCACTCCCACTAGCATCAACAACAACAATAACAACCACCAAATCAAAAGGGCTCGCCATGAGTGTAATAATCCCTTTGCTACACCTGATGTTGCTGTGGCTATTTCCAATCCCACTTCCAGAAAAGGTGAATCTTCATCCCATTTTCTTGGGTCTACTACCACTCAGCCATACCTTAAATCTCCCCTCTGTCTTGCTAACTTCGGTCTCAAAGCTGCGAGTTTTGACTCCGTGGCTTCTGTTTCTGCAAATAAGGAACCCAGGGGTTTGGAGTGGATGCTGAATGGAGATCCTATTTCCCTGGATGCTTCTAACTCCCAATGGCAGTCTCTGATGCATAATAAAGTTGGAATGAGCAGTGTTAGTTCCTGTAATACCACCGAGTCTCAGTATCTGAATTCATTTGCACTATATAGCTCTGGACTGGAACAACAGAACAGACGCCATCCTTTGTTCCTGAATCCTCTTCTTGTTCCCATGAAAAATCTCCAACCAGAGAAACCAAGGGGTTTCATTGATGCTTGGTCTAATGCAGAAACAGCTCAAAGCAATGCCAACACCAACAACAAGAACTCTGCTGCATCAATTGGTAAATTATCCCTCTCTTCTCTTGATCTATCAATGGGGGGTGGTGCTGTGAGTGAAGATGTTGATAATGTTAACATGGGTTTGGGACTAATGGAGACTTATGGAAAAACACACACTGATACTAAAATCTCTCTCTCAAATTGGCACAACCCGGCACCTTGGGTGGCTTCAAGTTCAACACTTGGGGGTCCTCTAGCTGAAGTTCTAAGGTCAAGCACAGTCACTGCCACGACCAATGAAGCAACCTCCAACGCAACCTCATCACCAGCCACCACTACACATGCTGAATCTAACAGCCCTCTGGGAACAATGGTGTCATCTCCATCCGGGGTGTTGCAGAAAACCCTTATTTCATTGTCTGATAGCAGTAACAATAGCAGCCCTACGGTTGCATCATCAAGGGCCAATTCTGAGATGGCCTTCCTCAGCTTTAAATTCTAG 1782 0.4596 MGELFGVGKRRDIISNNNSASSSVLGLDVKVQSPEVLFHNRMTMMGHHNHHLHPLSSPFDNNNDISCAAGDGDGDGPTTYMSLTNHINLVSGASVLGPAIDGGCGAAPAAPVRTLQPFQISSYTSPTTTTTAFEPFSGVMAASLGFPFTSAQWRELERQAMIYKYMMASVPVPPDLLIPTSLTSSSRSSCMDGGFNLRLANSTDPEPGRCRRTDGKKWRCSRDVAPNHKYCERHMHRGRPRSRKPVEVNTNTTPTSINNNNNNHQIKRARHECNNPFATPDVAVAISNPTSRKGESSSHFLGSTTTQPYLKSPLCLANFGLKAASFDSVASVSANKEPRGLEWMLNGDPISLDASNSQWQSLMHNKVGMSSVSSCNTTESQYLNSFALYSSGLEQQNRRHPLFLNPLLVPMKNLQPEKPRGFIDAWSNAETAQSNANTNNKNSAASIGKLSLSSLDLSMGGGAVSEDVDNVNMGLGLMETYGKTHTDTKISLSNWHNPAPWVASSSTLGGPLAEVLRSSTVTATTNEATSNATSSPATTTHAESNSPLGTMVSSPSGVLQKTLISLSDSSNNSSPTVASSRANSEMAFLSFKF* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1930 593 Pfam WRC 205 247 IPR014977 -
Gso4g1930 593 PANTHER GROWTH-REGULATING FACTOR 7 112 583 - -
Gso4g1930 593 MobiDBLite consensus disorder prediction 245 262 - -
Gso4g1930 593 SMART QLQ_2 146 182 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gso4g1930 593 Pfam QLQ 147 179 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gso4g1930 593 ProSiteProfiles WRC domain profile. 204 248 IPR014977 -
Gso4g1930 593 ProSiteProfiles QLQ domain profile. 147 182 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gso4g1930 593 MobiDBLite consensus disorder prediction 236 262 - -
Gso4g1930 593 MobiDBLite consensus disorder prediction 524 554 - -
Gso4g1930 593 PANTHER - 112 583 IPR031137 GO:0005634|GO:0006351|GO:0032502
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1930 Gso-Chr4 49528839 49532346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1930 415 570 GRF Transcription Factor Family AT5G53660 33.133 5.23e-11 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Gso4g1930 WRC 6.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1930 - - gmx:100803096 1046.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1930 4 49528839 49532346 Gso6g1139 6 11146557 11149992 GST