Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1929 CCCAACACTGCCTTACTTTTTTCACTCACGATGATCTACAATATTCGACATATTTTGCTCCTATTTTTCTTACTTCATAATTTTCATGACATACTATGCAACAATGACACAGACAAAGATGTCCTTCTTTCATTCAAATCCCAAGTGAGTGACCCCAAAAATGTTCTGTCTGGGTGGTCTTCAGATTCCAATCACTGCACCTGGTATGGTGTCACATGCTCCAAAGTTGGCAAGAGGGTCCAATCTCTCACTCTACCAGGACTTGCCCTCTCTGGCAAACTTCCCGCTCGTCTTTCCAACCTCACTTACCTACACTCCCTTGACCTTTCCAACAACTATTTTCATGGCCAAATACCCCTAGAATTCGGCCATCTCCTACTTCTCAATGTCATTGAATTACCTTACAACAATCTCAGTGGTACACTTCCACCACAGCTGGGTAATCTTCACCGTCTACAAATTTTAGACTTTTCAGTCAATAATCTCACAGGTAAAATTCCTCCATCATTTGGCAATCTCTCTTCTCTTAAAAAATTTTCCTTGGCAAGGAACGGTTTGGGGGGTGAGATTCCAACTGAACTTGGTAATCTCCACAATCTTTCCACTCTTCAACTCTCTGAGAACAATTTCTCTGGCGAGTTTCCCTCTTCTATCTTCAACATCTCTTCCTTGGTCTTCTTATCCGTGACAAGCAACAATTTATCAGGCAAGTTAACACAAAATTTTGGAACTGATCTTCCAAATATAGAAAATCTATTTCTGGCTAGCAATAGATTCGAAGGGGTAATTCCTAATTCCATATCCAATGCCTCACATCTTCAATACATTGACCTTGCTCACAATAAATTTCACGGTTCCATACCTCTATTCCACAACTTGAAAAACCTTACCAAACTCATTCTTGGTAATAACTTTTTCACTTCCACGACCTCACTGAATTCTAAGTTCTTTGAATCCCTTAGAAACTCCACCATGTTGCAAATTCTGATGATCAATGATAACCATTTGACTGGGGGCCTTCCAAGCTCTGTTGCTAATCTGTCTGGCAATCTTCAACAATTCTGTGTTGCTAACAATTTGCTAGCTGGTACCCTTCCTCAAGGAATGGAGAAATTTAAAAATCTTATATCCTTGTCTTTTGAAAACAATTCTTTCACTGGAGAGTTACCATCAGAAATAGGAGCACTACATAATCTAGAGCGACTTGCAATATACAGCAACAGATTGTCAGGGGAAATTCCAGACATTTTTGGCAATTTCACAAATATGTTTTTCCTTGCAATGGGAAATAATCAGTTCTCGGGTAGAATTTACCCAAGTATTGGACAATGCAAGAGATTAACTTTTCTTGACTTGGGAATGAATCGGCTAGGTGGGTCCATACCAGAGGAGATTTTTCAGCTTTCTGGTTTAACAGCCTTGTATTTAGAAGGAAACTCTCTGCATGGTTCGCTTCCTCATGAGGTCAAAATCATGACACAGCTTGAGACCATGGTCCTCTCTGGCAACCAGTTGTCAGGGAATATTTCTAAGGAAATAGAGGGTTTGTCTAGCTTGAAGTGGCTTCTGATGGCAGGAAACAAATTCAATGGTTCAATCCCAACCAATCTAGGGAATTTAGCATCCCTTGAGACTTTGGATTTATCATCAAACAATCTCACCGGTCCTATTCCTCAAAGTTTAGAAAAGCTCCAGTATATACAGACATTAAATTTGTCTTTCAACCATTTGGAAGGGGAGGTTCCAATGAAAGGTGTTTTTATGAACCTTACCAAGTTTGATCTTCGAGGTAACAACCAACTGTGCAGCCTTAACAAGGAAATAGTGCAGAATTTGGGAGTTCTCCTGTGCGTTGTTGGCAAAAAGAAAAGAAATAGCTTACTCCACATCATCCTTCCAGTTGTTGGTGCTACTGCTTTGTTCATTTCAATGCTCGTTGTGTTTTGCACAATCAAGAAGAAAAGAAAGGAGACGAAAATCAGTGCGTCATTGACCCCTCTCAGAGGGTTGCCTCAAAACATATCTTATGCTGATATTCTGATTGCCACAAACAATTTTGCAGCTGAAAACTTGATTGGAAAAGGAGGCTTTGGCTCAGTGTACAAGGGTGCGTTCAGGTTCAGCACTGGTGAAACCGCCACCCTTGCTGTCAAAGTCCTGGACCTGCAACAAAGCAAAGCTTCTCAGAGTTTCAGTTCTGAATGTCAAGCTTTAAAAAATGTTCGACACCGAAACCTAGTGAAGGTTATCACTTCTTGCTCCAGCCTTGATTATAAGGGAGAGGAATTCAAGGCCCTTGTTATGGAATTCATGCCCAATGGTAACTTGGACGTGAGTCTATACCCCGAAGATGTTGAGTCAGGATCCTCTCTAACCTTGTTGCAAAGATTGAACATTGCCATTGATGTTGCCTCTGCTATGGACTACTTGCACCATGACTGTAATCCACCGGTAGTGCATTGTGATATGAAACCTGCCAATGTCCTTCTAGATGAAAATATGGTAGCACATGTTGCAGATTTTGGATTGGCAAGGTTTCTATCTCAAAGTACATCAGAGATGCAGAGTAGCACTCTAGGACTGAAAGGATCAATAGGCTATATTGCCCCTGAATATGGTCTAGGAGCCAAGGCTTCAACTCGGGGCGATGTGTATAGTTTTGGGATCCTACTGCTAGAGATGTTCACAGCCAAAAGACCAACTGATGAAATCTTCAAAGAAGGATTAAGCCTAAGCAAATTTGTCTCAGCCATGGATGAGAATGAAGTACTAAAGGTTGCCGATCGAAGTCTTATTGTTGATTATGAATATTCAACTCAAAGCTCTATCACCGGTGATCAAAGCAGTGGCATTGGCAGCAACACACATTGGATTCGTAAAGCTGAGGAGTGCATAGCTGGTGTGATAAGAGTTGGGTTGTGTTGCACAGCTCAAGAACCTAAAGATCGATGGAGCATGAGAGAGGCCATAACAAAATTGCAAGCAATTAAGCACTCTATGTTGGCCTTGTGA 3012 0.4117 PNTALLFSLTMIYNIRHILLLFFLLHNFHDILCNNDTDKDVLLSFKSQVSDPKNVLSGWSSDSNHCTWYGVTCSKVGKRVQSLTLPGLALSGKLPARLSNLTYLHSLDLSNNYFHGQIPLEFGHLLLLNVIELPYNNLSGTLPPQLGNLHRLQILDFSVNNLTGKIPPSFGNLSSLKKFSLARNGLGGEIPTELGNLHNLSTLQLSENNFSGEFPSSIFNISSLVFLSVTSNNLSGKLTQNFGTDLPNIENLFLASNRFEGVIPNSISNASHLQYIDLAHNKFHGSIPLFHNLKNLTKLILGNNFFTSTTSLNSKFFESLRNSTMLQILMINDNHLTGGLPSSVANLSGNLQQFCVANNLLAGTLPQGMEKFKNLISLSFENNSFTGELPSEIGALHNLERLAIYSNRLSGEIPDIFGNFTNMFFLAMGNNQFSGRIYPSIGQCKRLTFLDLGMNRLGGSIPEEIFQLSGLTALYLEGNSLHGSLPHEVKIMTQLETMVLSGNQLSGNISKEIEGLSSLKWLLMAGNKFNGSIPTNLGNLASLETLDLSSNNLTGPIPQSLEKLQYIQTLNLSFNHLEGEVPMKGVFMNLTKFDLRGNNQLCSLNKEIVQNLGVLLCVVGKKKRNSLLHIILPVVGATALFISMLVVFCTIKKKRKETKISASLTPLRGLPQNISYADILIATNNFAAENLIGKGGFGSVYKGAFRFSTGETATLAVKVLDLQQSKASQSFSSECQALKNVRHRNLVKVITSCSSLDYKGEEFKALVMEFMPNGNLDVSLYPEDVESGSSLTLLQRLNIAIDVASAMDYLHHDCNPPVVHCDMKPANVLLDENMVAHVADFGLARFLSQSTSEMQSSTLGLKGSIGYIAPEYGLGAKASTRGDVYSFGILLLEMFTAKRPTDEIFKEGLSLSKFVSAMDENEVLKVADRSLIVDYEYSTQSSITGDQSSGIGSNTHWIRKAEECIAGVIRVGLCCTAQEPKDRWSMREAITKLQAIKHSMLAL* 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1929 1003 ProSiteProfiles Protein kinase domain profile. 686 1001 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g1929 1003 PANTHER RECEPTOR-LIKE PROTEIN 55 172 993 - -
Gso4g1929 1003 PANTHER RECEPTOR-LIKE PROTEIN 55 14 97 - -
Gso4g1929 1003 PANTHER RECEPTOR-LIKE PROTEIN 55 90 193 - -
Gso4g1929 1003 SUPERFAMILY Protein kinase-like (PK-like) 668 993 IPR011009 -
Gso4g1929 1003 SUPERFAMILY L domain-like 350 605 - -
Gso4g1929 1003 Gene3D Transferase(Phosphotransferase) domain 1 771 1001 - -
Gso4g1929 1003 Pfam Leucine rich repeat N-terminal domain 36 74 IPR013210 -
Gso4g1929 1003 SUPERFAMILY L domain-like 36 307 - -
Gso4g1929 1003 ProSiteProfiles Leucine-rich repeat profile. 542 565 IPR001611 GO:0005515
Gso4g1929 1003 Gene3D Ribonuclease Inhibitor 289 608 IPR032675 -
Gso4g1929 1003 Pfam Protein tyrosine and serine/threonine kinase 689 905 IPR001245 GO:0004672|GO:0006468
Gso4g1929 1003 Pfam Leucine rich repeat 247 304 IPR001611 GO:0005515
Gso4g1929 1003 Gene3D Ribonuclease Inhibitor 34 182 IPR032675 -
Gso4g1929 1003 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 172 993 - -
Gso4g1929 1003 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 14 97 - -
Gso4g1929 1003 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 90 193 - -
Gso4g1929 1003 SMART serkin_6 686 1001 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g1929 1003 Gene3D Ribonuclease Inhibitor 183 288 IPR032675 -
Gso4g1929 1003 ProSitePatterns Serine/Threonine protein kinases active-site signature. 818 830 IPR008271 GO:0004672|GO:0006468
Gso4g1929 1003 SMART LRR_sd22_2 396 422 - -
Gso4g1929 1003 SMART LRR_sd22_2 246 272 - -
Gso4g1929 1003 SMART LRR_sd22_2 149 175 - -
Gso4g1929 1003 SMART LRR_sd22_2 492 518 - -
Gso4g1929 1003 SMART LRR_sd22_2 293 314 - -
Gso4g1929 1003 SMART LRR_sd22_2 540 569 - -
Gso4g1929 1003 SMART LRR_typ_2 396 419 IPR003591 -
Gso4g1929 1003 SMART LRR_typ_2 197 221 IPR003591 -
Gso4g1929 1003 SMART LRR_typ_2 293 319 IPR003591 -
Gso4g1929 1003 SMART LRR_typ_2 149 172 IPR003591 -
Gso4g1929 1003 SMART LRR_typ_2 492 516 IPR003591 -
Gso4g1929 1003 SMART LRR_typ_2 246 269 IPR003591 -
Gso4g1929 1003 SMART LRR_typ_2 540 564 IPR003591 -
Gso4g1929 1003 SMART LRR_typ_2 444 468 IPR003591 -
Gso4g1929 1003 Gene3D Phosphorylase Kinase; domain 1 669 770 - -
Gso4g1929 1003 ProSitePatterns Protein kinases ATP-binding region signature. 692 718 IPR017441 GO:0005524
Gso4g1929 1003 Pfam Leucine Rich Repeat 151 173 IPR001611 GO:0005515
Gso4g1929 1003 Pfam Leucine Rich Repeat 542 564 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1929 Gso-Chr4 49522349 49525609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1929 26 998 Receptor kinase-like Gene Family AT3G47570 40.851 0.0 704
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Gso4g1929 PK_Tyr_Ser-Thr 3.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1929 - - gmx:100802571 1955.64