Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1923 ATGGCGGTTGCTGAGAATGTTGGGGCCAAAATCGGTTCTTCGAGCCAGAGCTTGGAGAACGGGTTAGTGTCAGCGGATTCGGGTGAGGTTGAGAAATCGAAAACCAAAGGCGATCAGAATCTGAACAACGGCGTTTTCAACCATCAAGAGAGAGTTCCCGGTACCATGCCAGTTCCTAACGGCAATTTCAGCTACAAGGCTCAGATGCACGCAAATGGGGTGAACAATGATGGGTATGGGATGAATGGGGTGACGAGTGAGGAGAATGGGGGTGAGAGTTTCAAGCGTGATATGAGGGATTTGGAAGAGCTTTTGTCAAAGTTGAACCCCATGGCTGAGGAATTTGTACCTCCATCACTAGCCAATACTCATGGCTTTTTAGCTGGACCTAATGCTGGGTTTGGTTACACTAACAATATTATACTGCCTACTAACTATGGAAATACTAATGGTCAAACTAACAACAGAAGGAGGAAGAATGGCTATAATCCTGGGAAGCGAAGAATGAATAATAAAATGGATATGGAGAAAAGGGAGGAGATGATTCGGAGAACAGTTTATGTGTCTGACATTGATCAACTGGTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGTGGCCAGGTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCCTTCGTTGAGTTCACAGATGAAGAAGGTGCAAGGGCTGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACCCATTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCGGTCAATCCAACATTTTTGCCCAGGTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATCTATTGCACAAATATCGACAAGAAGCTTACTCAAGCAGATGTCAAACACTTCTTCGAATCTATTTGCGGAGAGGTTCATCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTCGCACTGGCGGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGGGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCATGCACTGA 1110 0.4631 MAVAENVGAKIGSSSQSLENGLVSADSGEVEKSKTKGDQNLNNGVFNHQERVPGTMPVPNGNFSYKAQMHANGVNNDGYGMNGVTSEENGGESFKRDMRDLEELLSKLNPMAEEFVPPSLANTHGFLAGPNAGFGYTNNIILPTNYGNTNGQTNNRRRKNGYNPGKRRMNNKMDMEKREEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFVEFTDEEGARAALSLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVHRLRLLGDYHHSTRIAFVEFALAESAIAALSCSGVILGSLPIRVSPSKTPVRPRAPRPPMH* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1923 369 Pfam Ataxin-2 C-terminal region 105 119 IPR009818 -
Gso4g1923 369 MobiDBLite consensus disorder prediction 9 23 - -
Gso4g1923 369 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 369 - -
Gso4g1923 369 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 249 IPR000504 GO:0003723
Gso4g1923 369 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 283 350 IPR000504 GO:0003723
Gso4g1923 369 Gene3D - 268 363 IPR012677 -
Gso4g1923 369 Gene3D - 145 261 IPR012677 -
Gso4g1923 369 CDD RRM1_CID8_like 182 261 IPR034823 -
Gso4g1923 369 CDD RRM2_CID8_like 277 357 IPR034825 -
Gso4g1923 369 MobiDBLite consensus disorder prediction 147 166 - -
Gso4g1923 369 SUPERFAMILY RNA-binding domain, RBD 272 363 IPR035979 GO:0003676
Gso4g1923 369 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 259 IPR000504 GO:0003723
Gso4g1923 369 MobiDBLite consensus disorder prediction 1 54 - -
Gso4g1923 369 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 281 357 IPR000504 GO:0003723
Gso4g1923 369 SUPERFAMILY RNA-binding domain, RBD 155 261 IPR035979 GO:0003676
Gso4g1923 369 SMART rrm1_1 282 353 IPR000504 GO:0003723
Gso4g1923 369 SMART rrm1_1 185 255 IPR000504 GO:0003723
Gso4g1923 369 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 1 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1923 Gso-Chr4 49428252 49433915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1923 183 352 Eukaryotic Initiation Factors Gene Family AT1G34140 25.287 2.18e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1923 - - gmx:100787572 728.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1923 4 49428252 49433915 Gso6g1144 6 11204220 11209691 GST