Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1922 ATGAGCGGTCGCTTTTCTCGCACAATTTATGTCGGCAACCTGCCCTCTGATATAAGAGAGTCAGAAATTGAAGATCTATTCTACAAGTATGGCCGTATAATGGATATTGAATTGAAGGTTCCTCCCCGCCCTCCATGTTATTGCTTTGTTGAGTTTGATAATGCTCGAGATGCCGAAGATGCAATTCGGGGTCGAGATGGATACAACTTTGATGGTTGTCGGTTAAGAGTGGAGCTTGCTCATGGTGGTAGAGGGCCATCATCAAGTGATCGACGTGGATATGGAGGAGGAGGTGGTAATGGTGGAGCAGGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGTTATTGTTCGTGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAGGATCATATGCGAAAAGCTGGGGACGTGTGTTTTGCTGAGGTTTCCCGTGATAGTGAAGGGACTTTTGGCATTGTTGATTACACTAATTATGATGACATGAAGTATGCCATTCGGAAATTGGATGACACTGAGTTTAGAAATCCCTGGGCGAGAGCTTATATTCGGGTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCGCAGCAGGAGCCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGTAGATCTCTGGAGCGTTCTGTGTCTAGGTCACGATCTAGATCTCAATCAGCATCACCAATCAAATCTTCTAGGCCAAGATCACGATCACGATCTGGATCTGGATCTCCTCATCAGGTCCTGTCAGGTAGTGGTTGA 780 0.4667 MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRIMDIELKVPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGGGGNGGAGGGRFGISRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVRKYESSRSRSRSRSPSRSRSPKRVRSRSLERSVSRSRSRSQSASPIKSSRPRSRSRSGSGSPHQVLSGSG* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1922 259 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 194 IPR000504 GO:0003723
Gso4g1922 259 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 180 IPR000504 GO:0003723
Gso4g1922 259 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Gso4g1922 259 Gene3D - 116 193 IPR012677 -
Gso4g1922 259 SUPERFAMILY RNA-binding domain, RBD 6 186 IPR035979 GO:0003676
Gso4g1922 259 MobiDBLite consensus disorder prediction 224 259 - -
Gso4g1922 259 CDD RRM1_SF2_plant_like 8 79 - -
Gso4g1922 259 SMART rrm1_1 117 186 IPR000504 GO:0003723
Gso4g1922 259 SMART rrm1_1 8 78 IPR000504 GO:0003723
Gso4g1922 259 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR34A 2 255 - -
Gso4g1922 259 CDD RRM2_SF2_plant_like 116 191 - -
Gso4g1922 259 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Gso4g1922 259 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 255 - -
Gso4g1922 259 MobiDBLite consensus disorder prediction 81 106 - -
Gso4g1922 259 MobiDBLite consensus disorder prediction 193 259 - -
Gso4g1922 259 Gene3D - 2 115 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1922 Gso-Chr4 49419701 49424862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1922 8 200 Eukaryotic Initiation Factors Gene Family AT4G34110 24.378 1.96e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1922 K12890 - gmx:100786491 376.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1922 4 49419701 49424862 Gso6g1145 6 11212706 11217737 GST