Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1915 ATGGGAGAGGTGGTCATCATGAGTGGAGAGAAGAAGTCAGTTAGAGTGGAGGGGGTGGAGAAGGAAGATAGTGGTGGAAGTGGGAGCAAGGCTGGTGAATTTAAGGGGTTGATGAGGTGGGAGAAGTTCTTGCCCAAGATGGTTTTGAGGGTGCTGTTGGTTGAAGCAGATGATTCCACAAGACAAATTATTGCCGCGCTTCTCAGAAAATGCAGCTACAAAGTGGTTGCTGTTCCTGATGGCTTGAAGGCATGGGAATTACTCAAGGGAAGACCGCACAATGTTGATCTAATTCTGACAGAAGTGGATTTGCCATCCATATCTGGCTATGCACTTCTCACATTAATTATGGAGCACGAGATTTGCAAAAACATCCCTGTTATAATGATGTCTTCCCAAGATTCAATTAGCACAGTATACAAATGCATGTTGAGAGGTGCTGCTGATTATCTTGTTAAGCCTATTAGAAAAAATGAACTGAGGAACTTGTGGCAACATGTTTGGAGAAGACAATCATCAACCACTGGTATTAATGGCCTCCAAGATGAGAGTGTTGCACAACAGAAGGTTGAAGCCACTGCAGAAAATAATGCTGCTAGTAATCGTTCAAGTGGTGATGCTGCTTGCATTCAGAGAAATATAGAACTAATTGAGAAGGGAAGTGATGCACAGAGCTCTTGTACCAAGCCTGACTGTGAAGCTGAGAGTGACCCTGTCGGTAACATGCAGGAATTTTCTCTGCTGAAATGTGGGGAAGCATATCCAAGTGGAACAGAGACACAACAGGTTGAAACAAGCTTTCGCTTAGGCCAGACATTAATGATGCATGACTGTCATGCTGGAGGATTAAATGTGAGTATCCGCAAAAATGGTGAGGCAAGCACGACTAATGACAAGGATACTGATACAGAGCATTTTGGGAATGCTAGCATCAGTGTTAATTGCACAGGCAACTTTGACCATTCTCCTCAATTGGATCTTTCTTTGAGAAGATCTTGTCCCGGAAGCTTTGAGAATAAACTCACTGAAGAAAGGCACACCCTGATGCATTCTAATGCTTCAGCTTTCAAGCGGTATACTACCAGGCAATTGCAAATATCAATGCCTGCAGTGTTAATTAACTTCTCTGATCAACAAAGAGAACAGATAACAAATTGTGAGAAAAACATCTCACACATCGCTACTGGCAGCAACTCAGATAGTTCAACACCTATGCAAAGATGTATTGTGTCTCCAACTACAGTCCAATCAAAAGAATCTGAACTTGCAACCTCACACCCCCCGCAAGGACATTCTCTCCCAATTCCAGTAAAGGGTGTAAGGTTCAATGATCTATGCACAGCCTATGGTTCTGTACTTCCTTCAGTGTTTCATACACAGTCAGGTCCACCAGCAATGCCAAGTCCAAATTCAGTTGTGCTCCTTGAACCAAACTTTCAAGTAAATGCATTTTATCAGTCAAATATGAAAGAGAGTAGTTCAGAGCAGCTTTATGAATCTCGTGGTCCAAATGGAAACACCACCCAAAACCACATTGTGTACACACAGGAGCACAAATCAGAACATGCAGAAGATCGAGGACATATCTCTCCTACAACTGATCAAAGTGTGTCAAGTAGTTTCTGCAATGGAAATGCAAGCCATCTTAACAGCATTGGTTATGGAAGCAACTGTGGAAGTAGCAGCAATGTTGATCAAGTTAACACTGTCTGGGCAGCTTCAGAGGGAAAGCATGAAGACCTCACAAATAATGCAAACTCTCATCGATCTATCCAAAGAGAAGCAGCTCTAAACAAATTTCGCTTGAAAAGGAAAGAGAGATGCTATGAGAAGAAGGTTCGATACGAGAGCAGAAAAAAACTAGCAGAGCAGCGTCCCAGAGTTAAAGGACAATTTGTTCGTCAAGTGCATCCTGATCCTCTTGTTGCAGAAAAAGATGGCAAAGAATATGATCATTCAGATTTCTGA 1968 0.4248 MGEVVIMSGEKKSVRVEGVEKEDSGGSGSKAGEFKGLMRWEKFLPKMVLRVLLVEADDSTRQIIAALLRKCSYKVVAVPDGLKAWELLKGRPHNVDLILTEVDLPSISGYALLTLIMEHEICKNIPVIMMSSQDSISTVYKCMLRGAADYLVKPIRKNELRNLWQHVWRRQSSTTGINGLQDESVAQQKVEATAENNAASNRSSGDAACIQRNIELIEKGSDAQSSCTKPDCEAESDPVGNMQEFSLLKCGEAYPSGTETQQVETSFRLGQTLMMHDCHAGGLNVSIRKNGEASTTNDKDTDTEHFGNASISVNCTGNFDHSPQLDLSLRRSCPGSFENKLTEERHTLMHSNASAFKRYTTRQLQISMPAVLINFSDQQREQITNCEKNISHIATGSNSDSSTPMQRCIVSPTTVQSKESELATSHPPQGHSLPIPVKGVRFNDLCTAYGSVLPSVFHTQSGPPAMPSPNSVVLLEPNFQVNAFYQSNMKESSSEQLYESRGPNGNTTQNHIVYTQEHKSEHAEDRGHISPTTDQSVSSSFCNGNASHLNSIGYGSNCGSSSNVDQVNTVWAASEGKHEDLTNNANSHRSIQREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQVHPDPLVAEKDGKEYDHSDF* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1915 655 MobiDBLite consensus disorder prediction 639 655 - -
Gso4g1915 655 ProSiteProfiles Response regulatory domain profile. 50 168 IPR001789 GO:0000160
Gso4g1915 655 MobiDBLite consensus disorder prediction 621 655 - -
Gso4g1915 655 SMART REC_2 49 164 IPR001789 GO:0000160
Gso4g1915 655 Pfam Response regulator receiver domain 51 162 IPR001789 GO:0000160
Gso4g1915 655 Gene3D - 47 234 - -
Gso4g1915 655 PANTHER POPULUS TRICHOCARPA PSEUDO-RESPONSE REGULATOR 5A MRNA 314 628 - -
Gso4g1915 655 PANTHER POPULUS TRICHOCARPA PSEUDO-RESPONSE REGULATOR 5A MRNA 12 317 - -
Gso4g1915 655 SUPERFAMILY CheY-like 49 177 IPR011006 -
Gso4g1915 655 ProSiteProfiles CCT domain profile. 593 635 IPR010402 GO:0005515
Gso4g1915 655 MobiDBLite consensus disorder prediction 413 432 - -
Gso4g1915 655 MobiDBLite consensus disorder prediction 413 427 - -
Gso4g1915 655 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 317 IPR045279 GO:0009736
Gso4g1915 655 PANTHER TWO-COMPONENT RESPONSE REGULATOR 314 628 IPR045279 GO:0009736
Gso4g1915 655 CDD psREC_PRR 51 154 - -
Gso4g1915 655 Pfam CCT motif 593 635 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1915 Gso-Chr4 49361479 49366486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1915 19 637 Response Regulator Gene Family AT5G24470 41.746 4.05e-129 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Gso4g1915 Response_reg 4.7e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1915 K12130 - gmx:100784383 1320.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1915 4 49361479 49366486 Gso6g1152 6 11261812 11266575 GST