Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1899 ATGGGTTCGGTGGACTGTTATCCGTCTCGTGTGGACGATGCGGCCGTGGTGTCTCTAGATTCGCTGCCGTTAGGGTTCCGATTCCGACCTACCGACGAGGAACTCGTCAATTACTACCTGCGACAGAAGATCAACGGTAATGGTCGCGAGGTTTGGGTTATCCGAGAAATTGATGTCTGCAAATGGGAGCCTTGGGACATGCCCGGTTTGTCGGTGGTACAGACTAAGGATCCGGAGTGGTTCTTCTTCTGTCCACAGGACCGAAAGTATCCAAATGGGCATCGATTGAACAGAGCGACGAATAATGGGTATTGGAAGGCGACGGGGAAGGATCGTAAAATCAAGTCTGGGACGATTTTGATTGGAATGAAGAAGACTTTGGTGTTCTACACTGGTCGAGCACCCAAGGGGAATAGGACCAATTGGGTTATGCATGAGTATCGCCCCACTTTGAAGGAGCTTGATGGTACCAATCCTGGACAGAATCCATATGTCCTTTGTCGCTTGTTTAAGAAACATGATGAGAGCCTTGAAGTTTCACACTGTGATGAAGCAGAGCCGACTGCTTCCACTCCTGTGGCTGCCTATTACTCCACAGAGGAAATACAATCTGATCTGGCTGTTGTTGCAGGATCGCCGTCACAAGTTACAGAAGATGATAAGCATCAGTCAATGATCCCTGCACACTCTGAGGAAGCAATATCCAATGTTGTAACCCCGGTTGATCGCTGTACTGATGGATATGATGCTTGTGATGCACAAAATCAAATTGAGTTACCAACTGCGGAGGAGTTTCAACCATTGAACTTTGATATATATTATGACCCAAGAAGCGAGCTACTGGATGGCAAATTATTCTCCCCTGTACTTGCACATATTCAACCAGAATTTCATTATCAAGCAAACATCGAATCAGATGGTCGATATGGGCTTCAATATGGTACAAATGAGACAAACATGTCAGACTTTTTGAATTCAGTTGTTAACTGGGATCAAGTACCCTTTGAGGATCCCAATTGTCAACAGCAGAGCTACCCCTTGTTTAATGTTAAGGATAACATATTAAACAGCGACTTAGATTCTGAACTTGCCAATATGACATGTATGCAAGCTGGTTATGCGGAGGGGGCAATTGATGGAAGGATTCCTTTGTTGATAACTTCAGAATTTTGCAGCACCACTGGAATCCCCGTTGACTGTGTTGGTGACGAGCAGAAAAGCAATGTTGGGTTATTTCAAAACAATTCCCAGAGAGCTTTTACTGATGTTAATATGGGTCAAGTATACAATGTAGTCGATGATTATGAGCAACAAAGAATCTGTAGTGCAGTTGCTAGTGGCAATACTGGAATCATAAGGAGGCATCGTGAGGTACGAAATGAACAGCTAAGCATAAACTCAACACAAGGTACTGCACAGAGGAGAATTCGTTTGTCAATGGCTACACATGGCTCAAATAAGACGGTGAAAAGTGAAAGTTGTGCACAAGAAGAGCTTTATGCAAAACCAGTCATTGCTGTGGGGGAGAAAGGTTCAGAAAATCATGCTTCTGATGAAAGTGCTACTCTTACTAATGATGGGAATGAACTGCAGAAGACACCTGAGTCAACCGGCAAAAGAAAGATTTCTCAACAAGTTACAAAAGCAGGCTCCACCTTGGGGTTGAAAGATCTTTTCTTGCTCAGAAGGGTCCCTCACATTTCAAAGGCTTCCTCAAATCGCACCAAGTGCTCTTCTGTTTTTGTACTTTCTGCCTTTGTAATGGTCTCATTAGTGGTCTTTACTGACATTTGGGGATATCTTAAATTTTAA 1812 0.4382 MGSVDCYPSRVDDAAVVSLDSLPLGFRFRPTDEELVNYYLRQKINGNGREVWVIREIDVCKWEPWDMPGLSVVQTKDPEWFFFCPQDRKYPNGHRLNRATNNGYWKATGKDRKIKSGTILIGMKKTLVFYTGRAPKGNRTNWVMHEYRPTLKELDGTNPGQNPYVLCRLFKKHDESLEVSHCDEAEPTASTPVAAYYSTEEIQSDLAVVAGSPSQVTEDDKHQSMIPAHSEEAISNVVTPVDRCTDGYDACDAQNQIELPTAEEFQPLNFDIYYDPRSELLDGKLFSPVLAHIQPEFHYQANIESDGRYGLQYGTNETNMSDFLNSVVNWDQVPFEDPNCQQQSYPLFNVKDNILNSDLDSELANMTCMQAGYAEGAIDGRIPLLITSEFCSTTGIPVDCVGDEQKSNVGLFQNNSQRAFTDVNMGQVYNVVDDYEQQRICSAVASGNTGIIRRHREVRNEQLSINSTQGTAQRRIRLSMATHGSNKTVKSESCAQEELYAKPVIAVGEKGSENHASDESATLTNDGNELQKTPESTGKRKISQQVTKAGSTLGLKDLFLLRRVPHISKASSNRTKCSSVFVLSAFVMVSLVVFTDIWGYLKF* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1899 603 Pfam No apical meristem (NAM) protein 23 148 IPR003441 GO:0003677|GO:0006355
Gso4g1899 603 MobiDBLite consensus disorder prediction 511 545 - -
Gso4g1899 603 Gene3D NAC domain 31 176 IPR036093 GO:0003677|GO:0006355
Gso4g1899 603 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 17 464 - -
Gso4g1899 603 MobiDBLite consensus disorder prediction 517 545 - -
Gso4g1899 603 PANTHER NAC DOMAIN-CONTAINING PROTEIN 91 17 464 - -
Gso4g1899 603 SUPERFAMILY NAC domain 17 172 IPR036093 GO:0003677|GO:0006355
Gso4g1899 603 ProSiteProfiles NAC domain profile. 22 172 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1899 Gso-Chr4 49213301 49216629 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1899 15 206 NAC Transcription Factor Family AT4G35580 71.354 1.12e-94 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso4g1899 NAM 4.3e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1899 - - gmx:100777071 1231.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1593 14 47893279 47897243 Gso4g1899 4 49213301 49216629 PCT
Gso2g1894 2 43163914 43168012 Gso4g1899 4 49213301 49216629 PCT
Gso4g1899 4 49213301 49216629 Gso14g1593 14 47893279 47897243 PCT
Gso4g1899 4 49213301 49216629 Gso2g1894 2 43163914 43168012 PCT