Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1887 ATGGAGACTCTGAAAGCTGCAATTCCAGAAAACCTGAAGCGAGCGATAGGGGATAGCGATGTCGATGACCTTCGCAGCACATGCTCTTCTCTTCACCGCTTCTTTCTCCACTTCCACCCATTTCACCAGATGATCACTGAACTCGCAGATCCAAAGTATGCTCTGTGCGCCAAGAACAAGGACGCTGCGTTGAAATCCAGGCTGCTTGGTAATCAGTGCTTCTCCAACGCAGATTATGCTAAGGCCTTGGACTGCTACACTCAGGCATTGCGCGAGGCTCCATTAGACACCGCCAGTGATATGGAGAGTAATCTTGTTGTTGCAACATTATATATCAATCGTGCTACTGTATTGCATAAAATGAGTCTTATAGTAGAATGCTTACGAGATTGCACTCGAGCTCTTCAAATTTGTCCAAGCTATGCTAAGGCATGGTACAGGAGAGGTAAGGCAAATGCTTCATTGGGAAATTATAAAAATGCAATTTGTGATCTAAATGTGGCTAAGAGTGTGGAACCTTCAATGGGTGGGAAGAGACAAATAGAAGGTGAACTGAAAATTCTTTTAGACCAATGCAAAAGCACGACTGCAGTAGAACAAATACAACATACAGAGAACAACTGCAATACTGTGGGTGAGATGCCTCACATAAAGCTACAGCGGGTCTCCACACCTGATAAAGGAAGAGGCATCGTGTCATCATGTGTCATTTCACCAGGTTCTTTGGTTCATGCTGAAGAACCTTATGCTATGATAATATTAAAGCAATGTCGGGAAACCCATTGCCATTATTGCTTGAACGACCTACCTGCTGATAGAGTTCCTTGTATATTGTGTTCAATACCATTGTATTGCTCCCACCAATGCCGGATACGGGCAACTGGGCAAATGTTCAAAATTTACCCAGAGTATAATGGCTTTTTCAAAAACTTACCCAGTGATCTTGGAGAATATGCTGCTGAAGTTATTCAATGCAATGATTCTGAACTGGAAATTGGGGATATTACTGAACATAAACATGAATGTCAAGGTGTACATTGGCCTATGGTACTTCCGTCTGAGATAGTTTTGGCTGGTCGAATCCTAGCTAGGTTTTTGCTAAATATCCCACCTGAAGATATTATAAACTTTGTGGAAAGGCTGGAGCTTTCTCATTGTTACAAACAAATGTCATCTGAAAGAAAGTTGGATTCACATATATATGCCGTTGTATTATTATATTGTCTTCAACACTCTTGTGGAATTATGTTTTCCATAGACGAAGTCTTCATATCACAGGTTGTTATAATTATTTCTCAAATTAAAGTAAATTGTATGACTGTCGTTCGTTTAAAATCAATAGACGCCCATGGACTATCAGGTCGCTTTGGAGAATTTCCATTTCAATCTGGTGCTCATTCAACTAGTAATGTGGAACAGGTCAGAGTGGGTAAAGCTATTTATAAAGCTGGCAGTTTATTCAACCATTCTTGCCAGCCAAATACTCATGCATATTTTCTTTCACGCACTCTTTATTTACGAACCACAAATGTTGTAGCAGCCGAGAGTCAACTAGAATTATCTTATGGTCCACAGGTTGGGTTGTGGGATTGTAAAGATCGCCTTAATTTTCTCAAAGACGAGTATGCATTTCTTTGTCAGTGTACTGGTTGTTCAGAAGTTAATCTATCTGACATTGTCCTCAATGCCTTCCATTGTGTCAATACAAATTGTTCTGGCACAGTGTTGGAAAGCAGAGTACATGACAGTGAGAAGCAGAAAATCAAGCACTTCCCTATTTCTGACCATGTTGACAAAAATGCTGACATTTATGAAGTATGTCTTCGTGTCTTCAAACAAAATGGTGCCTCTATTGATATTCAACCTGGATACTGTTTGAAATGTGGTTCTTACTGTGATTTGGAGTCTTCACGTGCTGCAGTCAGTAAAGCTTTAACATGCATAAAAAGGTTGCAGGATGCAATATTGTCACAACAAATTTCAAGTATTACTATTTCTGATGCTTTGAAATCTCTTCGATTGCTAAGATTAAATTTGCATGCATACAACAAGCTTATTGCAGAGGCAGAAGACAGCATTGCCCAGGCATTTTGTTTAGTGGGAGAATTACAATTATCTTTGGATCATTGTAAAGCATCTATCCAGATTCTGGAAAAGCTATATGATACTGATGATATTGTTATTGCATATGAACTTGTGAAGCTTTCTTCCATCCAACTTTCCTTGGGTGATGGTACTGCTGTGGAAAGTATAAGTCGAATAGATGATATCTTCTCACGTTATTATGGACTTCATGCAGACTTGGTCTTCCCTTATCTTCAATACCTTAGGAGAGAAATTAAGAAATTTTCAGTGAAGGCTCTCCAATAA 2370 0.3949 METLKAAIPENLKRAIGDSDVDDLRSTCSSLHRFFLHFHPFHQMITELADPKYALCAKNKDAALKSRLLGNQCFSNADYAKALDCYTQALREAPLDTASDMESNLVVATLYINRATVLHKMSLIVECLRDCTRALQICPSYAKAWYRRGKANASLGNYKNAICDLNVAKSVEPSMGGKRQIEGELKILLDQCKSTTAVEQIQHTENNCNTVGEMPHIKLQRVSTPDKGRGIVSSCVISPGSLVHAEEPYAMIILKQCRETHCHYCLNDLPADRVPCILCSIPLYCSHQCRIRATGQMFKIYPEYNGFFKNLPSDLGEYAAEVIQCNDSELEIGDITEHKHECQGVHWPMVLPSEIVLAGRILARFLLNIPPEDIINFVERLELSHCYKQMSSERKLDSHIYAVVLLYCLQHSCGIMFSIDEVFISQVVIIISQIKVNCMTVVRLKSIDAHGLSGRFGEFPFQSGAHSTSNVEQVRVGKAIYKAGSLFNHSCQPNTHAYFLSRTLYLRTTNVVAAESQLELSYGPQVGLWDCKDRLNFLKDEYAFLCQCTGCSEVNLSDIVLNAFHCVNTNCSGTVLESRVHDSEKQKIKHFPISDHVDKNADIYEVCLRVFKQNGASIDIQPGYCLKCGSYCDLESSRAAVSKALTCIKRLQDAILSQQISSITISDALKSLRLLRLNLHAYNKLIAEAEDSIAQAFCLVGELQLSLDHCKASIQILEKLYDTDDIVIAYELVKLSSIQLSLGDGTAVESISRIDDIFSRYYGLHADLVFPYLQYLRREIKKFSVKALQ* 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1887 789 ProSiteProfiles SET domain profile. 217 523 IPR001214 GO:0005515
Gso4g1887 789 SUPERFAMILY SET domain 206 553 IPR046341 -
Gso4g1887 789 ProSiteProfiles TPR repeat profile. 142 175 IPR019734 GO:0005515
Gso4g1887 789 Gene3D Tetratricopeptide repeat domain 531 787 IPR011990 GO:0005515
Gso4g1887 789 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 779 - -
Gso4g1887 789 SUPERFAMILY TPR-like 58 193 IPR011990 GO:0005515
Gso4g1887 789 Gene3D SET domain 417 522 IPR046341 -
Gso4g1887 789 Gene3D Tetratricopeptide repeat domain 39 202 IPR011990 GO:0005515
Gso4g1887 789 SMART tpr_5 63 96 IPR019734 GO:0005515
Gso4g1887 789 SMART tpr_5 687 720 IPR019734 GO:0005515
Gso4g1887 789 SMART tpr_5 108 141 IPR019734 GO:0005515
Gso4g1887 789 SMART tpr_5 142 175 IPR019734 GO:0005515
Gso4g1887 789 Coils Coil 672 692 - -
Gso4g1887 789 Pfam SET domain 465 523 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1887 Gso-Chr4 49115786 49127259 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gso4g1887 SET 6e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1887 K24634 - gmx:100794609 1545.41