Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1879 ATGGAATCGTCACCGTCCTCGTCGTCTTCTGGAAGCGACACCAGTGGTGGTGGTGGTGGTGGTGGCGGCGGCGCTGTCACGTGGTTCGGGATGAGTTTCCCATTCCGTTCTCCGCTCTCTCTCGTGATGGATTACTGCGTACGCGAGGATTCTGCGGAGCCTGTGATTATCATTCCCCGCACGCGCCCGCGTTTTCAGGCGCATGCCGAATCGGACGCTGCTTCGGCCTCTGATTCCGATGAGAATGCGTGCAACGGCGCTGCTGAGGAGGTTGCGATACGCATAATTGGGGTCGGCGAGCAGGAGAGCGGTTCGTCGCCCTCATCGTCGAGGGGCCGGGGCGGGGAGCTGGGCGGTGAGGAGGCGGTGGTTGGGAGGAGCGGGATGCTGTCGTCTCGCCGGCGAATGGCGGAGGAGAGGGTGCCGTTGGTGTCTTTGGATGATGGGATTGTTGGCGCTAGGGATTCTTCTTCTTCATCATCGTCCTCTACTTACCAGAGGTATGATATTCAGCAGGTTGCGAAGTGGATTGAGCAGATTCTACCGTTTTCTCTCTTGTTGCTGATTGTTTTCATCCGCCAGCATTTGCAAGGTTTCTTTGTCACAATTTGTATATCAGCTGTGATGTTCAAGTCAAATGAAATTGTTAAGAAGCAGACTGCCCTGAAGGGAGATCGGAAAGTCTCTGTTCTTCTCGGTATCTCTTTTGCCTTTATGCTGCATGTGATAAGCATTTACTGGTGGTATCGAAATGATGATCTTTTATACCCACTGGCCATGCTTCCACCAAAAACACCGCCACCTTTCTGGCATACAATATTCATCATTTTGGTGAATGATACATTGGTGCGGCAAGCAGCAATGGCTTTCAAATGTTTGTTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTCCGTCGGCAGGGTCAAATGTTAACTCTGGTCGAGTATACTCTGCTGCTGTATCGTGCCTTGTTGCCAACACCAGTTTGGTACCGATTTTTCTTGAACAAGGATTATGGAAGTCTCTTTTCCTCACTGACCACAGGATTGTATCTAACTTTCAAGCTAACATCAGTAGTTGAGAAGGTCCAGTGCTTCGTTTCTGCCTTAAAAGCATTATCAAAAAAGGAAGTTCATTATGGGGTTCATGCCACAACGGAACAGGTGAATGCTGCTGGTGACATGTGTGCTATATGCCAGGAGAAGATGCAGGCTCCCATATTGTTGAGCTGTAAACACATGTTCTGTGAGGAGTGTGTATCTGAATGGTTTGAGAGAGAACGAACTTGTCCATTATGCAGGGCATTGGTAAAACCAGCTGATCTGCGGACCTTCGGAGATGGATCAACAAGTCTATTTTTTCAGTTGTTTTAA 1380 0.4906 MESSPSSSSSGSDTSGGGGGGGGGAVTWFGMSFPFRSPLSLVMDYCVREDSAEPVIIIPRTRPRFQAHAESDAASASDSDENACNGAAEEVAIRIIGVGEQESGSSPSSSRGRGGELGGEEAVVGRSGMLSSRRRMAEERVPLVSLDDGIVGARDSSSSSSSSTYQRYDIQQVAKWIEQILPFSLLLLIVFIRQHLQGFFVTICISAVMFKSNEIVKKQTALKGDRKVSVLLGISFAFMLHVISIYWWYRNDDLLYPLAMLPPKTPPPFWHTIFIILVNDTLVRQAAMAFKCLLLIYYKNGRGHNFRRQGQMLTLVEYTLLLYRALLPTPVWYRFFLNKDYGSLFSSLTTGLYLTFKLTSVVEKVQCFVSALKALSKKEVHYGVHATTEQVNAAGDMCAICQEKMQAPILLSCKHMFCEECVSEWFERERTCPLCRALVKPADLRTFGDGSTSLFFQLF* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1879 459 Pfam Zinc finger, C3HC4 type (RING finger) 396 439 - -
Gso4g1879 459 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 372 446 IPR013083 -
Gso4g1879 459 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 459 - -
Gso4g1879 459 MobiDBLite consensus disorder prediction 1 16 - -
Gso4g1879 459 ProSiteProfiles Zinc finger RING-type profile. 398 436 IPR001841 -
Gso4g1879 459 CDD RING-HC_RNFT1_like 397 436 - -
Gso4g1879 459 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 3 459 IPR044235 GO:0061630|GO:1904294
Gso4g1879 459 SMART ring_2 398 435 IPR001841 -
Gso4g1879 459 MobiDBLite consensus disorder prediction 1 23 - -
Gso4g1879 459 SUPERFAMILY RING/U-box 389 441 - -
Gso4g1879 459 MobiDBLite consensus disorder prediction 98 122 - -
Gso4g1879 459 ProSitePatterns Zinc finger RING-type signature. 413 422 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1879 Gso-Chr4 49044005 49050740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1879 60 459 C3H Transcription Factor Family AT5G01960 67.750 0.0 552
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1879 - K22379 gmx:100816630 800.816