Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1877 ATGGGGAGGAGGCCTGCAAGGTGTTATCGGCAGATAAAAAACAAGCCATACCCCAAATCACGCTTTTGCCGTGGTGTTCCTGATCCTAAGATCAGAATTTATGATGTTGGTATGAAGAAGAAAGGTGTTGATGAGTTTCCCTTCTGTGTTCATCTGGTTAGCTGGGAAAAAGAAAATGTTTCAAGTGAAGCATTGGAAGCTGCTAGAATTGCATGCAACAAATATATGGCGAAATTTGCTGGAAAAGATGCTTTCCACTTGAGAGTCCGAGTACATCCATTCCATGTTCTTAGGATCAACAAAATGCTTTCATGTGCTGGAGCTGATAGGCTTCAGACTGGAATGAGAGGTGCATTTGGAAAGCCACAGGGAACATGTGCTAGAGTCGCCATTGGTCAGGTTCTTCTTTCTGTCCGCTGCAAGGACAGCAACAGTCATCATGCACAGGAGGCTCTTCGTCGTGCTAAGTTTAAGTTCCCTGGTCGTCAGAAGATCATAGTTAGCCGGAAATGGGGTTTCACCAAGTTTAGCCGTGCTGATTATCTCAAGTACAAGTCAGAGAGCAGGATTGTGCCTGATGGTGTGAATGCTAAGCTTCTTGGGTGCCATGGACCACTGGCAAACCGTCAACCAGGACAAGCTTTTCTATCTAGTGCTACTGCTACTGCTTAG 672 0.4554 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKYKSESRIVPDGVNAKLLGCHGPLANRQPGQAFLSSATATA* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1877 223 TIGRFAM uL16_euk_arch: ribosomal protein uL16 1 174 IPR001197 GO:0003735|GO:0005840|GO:0006412
Gso4g1877 223 CDD Ribosomal_L16_L10e 41 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Gso4g1877 223 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 1 218 - -
Gso4g1877 223 Gene3D Ribosomal protein L10e/L16 1 218 IPR036920 GO:0003735|GO:0005840|GO:0006412
Gso4g1877 223 PANTHER 60S RIBOSOMAL PROTEIN L10 1 218 IPR001197 GO:0003735|GO:0005840|GO:0006412
Gso4g1877 223 Pfam Ribosomal protein L16p/L10e 12 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Gso4g1877 223 PIRSF RPL10a_RPL10e 1 182 IPR001197 GO:0003735|GO:0005840|GO:0006412
Gso4g1877 223 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
Gso4g1877 223 SUPERFAMILY Ribosomal protein L16p/L10e 4 173 IPR036920 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1877 Gso-Chr4 49032914 49035426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1877 1 220 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 87.273 1.10e-145 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1877 K02866 - gmx:100815571 461.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1579 14 47753705 47755476 Gso4g1877 4 49032914 49035426 PCT
Gso2g1876 2 42966678 42968476 Gso4g1877 4 49032914 49035426 PCT
Gso4g1877 4 49032914 49035426 Gso14g1579 14 47753705 47755476 PCT
Gso4g1877 4 49032914 49035426 Gso2g1876 2 42966678 42968476 PCT