Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1875 ATGAAGTTGCAGTTCTCTATTGTTGCACTTGTTCTATTAGGCTCCACACTGTCCTTCTGTGGCCTGATAGTAGCTGACTTGAACTCTGACCAACATGCTCTCTTGGAGTTTGCTTCAAGTGTCCCACATGCCCCAAGGCTCAACTGGAAGAATGACTCTGCTTCAATTTGCACCTCATGGGTTGGTGTGACATGCAACTCCAACGGCACACGTGTCGTAGGCCTCCATCTTCCAGGGATGGGATTAACCGGGACCATTCCAGAGAACAGCATAGGAAAACTAGATGCTCTTAGGGTCCTGAGTCTTCATTCTAATGGACTTATAGGAAGTCTTCCTTCTAATGTACTCTCCATTCCTTCACTCCAATTTGCATACCTTCAGCACAATAGCTTCTCTGGCCTAATTCCTTCTCCAGTGACCCCTAAACTCATGACATTGGACATTTCTTTTAACTCCTTTTCTGGCACCATCCCACCAGCTTTTCAGAACCTTAGAAGACTCACTTGGTTGTATCTCCAAAACAATTCCATATCTGGGGCTATTCCTGACTTCAACCTTCCAAGTCTCAAGCATTTGAACTTGAGCTATAATAACTTGAATGGCTCAATTCCAAACTCCATAAAGGCATTCCCTTACACTTCTTTTGTTGGGAACGCTCTCTTATGCGGGCCACCTCTCAATCATTGCTCTACAATCTCCCCTTCTCCATCTCCTTCCACTGATTACGAGCCACTCACTCCACCAGCCACCCAAAACCAAAATGCTACACACCATAAGGAAAACTTTGGCCTAGTTACTATACTTGCTCTAGTCATTGGGGTCATTGCCTTCATCTCTTTAATAGTTGTAGTGTTCTGTTTGAAGAAGAAGAAAAACAGCAAAAGCAGTGGCATACTGAAAGGAAAGGCTTCTTGTGCTGGAAAGACTGAGGTTTCAAAGAGTTTTGGGAGTGGAGTGCAAGGGGCTGAAAAGAACAAGCTATTTTTCTTTGAAGGTTCCTCTCACAGCTTTGACCTTGAGGATTTGCTGAAGGCTTCAGCTGAAGTTCTTGGAAAAGGAAGTTATGGAACAGCATACAAGGCTGTTTTGGAGGAGGGAACAACAGTGGTAGTTAAAAGGTTGAAGGAAGTTGTGGTAGGAAAGAAGGAGTTTGAGCAGCAGTTGCAGATTGTGGGGAGAATTGGAAACCACCCCAATGTGATGCCACTAAGGGCTTATTACTATTCCAAAGATGAGAAACTTCTGGTTTACAACTACATGCCAGGTGGCAGCTTGTTTTTCTTGTTGCATGGAAACAGGGGAGCAGGAAGAAGCCCACTAGACTGGGACTCCAGAGTGAAAATTTTGCTAGGAGCTGCCAGGGGAATAGCTTTCATCCACTCAGAGGGGGGTCCAAAGTTCTCACATGGCAACATCAAGTCAACCAATGTGCTCATAACCCAAGAACTGGACGGCTGCATCTCCGATGTGGGATTGCCGCCTCTAATGAACACTCCAGCAACCATGTCAAGAGCCAATGGCTACAGAGCTCCAGAAGTCACAGACTCAAAGAAGATCAGTCACAAGTCTGATGTCTACGGCTTTGGCGTGCTGCTGCTTGAAATGCTGACAGGGAAGACCCCTTTGAGGTACCCTGGCTATGAAGATGTGGTTGATCTTCCAAGGTGGGTGAGGTCTGTTGTGAGAGAGGAGTGGACTGCTGAAGTGTTTGATGAGGAGCTTCTGAGAGGGCAATATGTTGAAGAGGAGATGGTGCAGATGCTTCAGATTGCACTGGCATGTGTGGCTAAGGGGTCTGATAATAGGCCTAGAATGGATGAAGTTGTTAGAATGTTGGAGGAGATTAAGCATCCTGAGTTGAAGAACCACCACAGGCAATCCTCTCATGAATCTGACTCTAATGTGCAGACACCAACACCATGA 1923 0.4587 MKLQFSIVALVLLGSTLSFCGLIVADLNSDQHALLEFASSVPHAPRLNWKNDSASICTSWVGVTCNSNGTRVVGLHLPGMGLTGTIPENSIGKLDALRVLSLHSNGLIGSLPSNVLSIPSLQFAYLQHNSFSGLIPSPVTPKLMTLDISFNSFSGTIPPAFQNLRRLTWLYLQNNSISGAIPDFNLPSLKHLNLSYNNLNGSIPNSIKAFPYTSFVGNALLCGPPLNHCSTISPSPSPSTDYEPLTPPATQNQNATHHKENFGLVTILALVIGVIAFISLIVVVFCLKKKKNSKSSGILKGKASCAGKTEVSKSFGSGVQGAEKNKLFFFEGSSHSFDLEDLLKASAEVLGKGSYGTAYKAVLEEGTTVVVKRLKEVVVGKKEFEQQLQIVGRIGNHPNVMPLRAYYYSKDEKLLVYNYMPGGSLFFLLHGNRGAGRSPLDWDSRVKILLGAARGIAFIHSEGGPKFSHGNIKSTNVLITQELDGCISDVGLPPLMNTPATMSRANGYRAPEVTDSKKISHKSDVYGFGVLLLEMLTGKTPLRYPGYEDVVDLPRWVRSVVREEWTAEVFDEELLRGQYVEEEMVQMLQIALACVAKGSDNRPRMDEVVRMLEEIKHPELKNHHRQSSHESDSNVQTPTP* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1875 640 Pfam Leucine rich repeat 141 199 IPR001611 GO:0005515
Gso4g1875 640 Gene3D Phosphorylase Kinase; domain 1 310 419 - -
Gso4g1875 640 ProSiteProfiles Leucine-rich repeat profile. 188 210 IPR001611 GO:0005515
Gso4g1875 640 SUPERFAMILY Protein kinase-like (PK-like) 348 616 IPR011009 -
Gso4g1875 640 ProSitePatterns Protein kinases ATP-binding region signature. 350 381 IPR017441 GO:0005524
Gso4g1875 640 PANTHER OS05G0588300 PROTEIN 3 640 - -
Gso4g1875 640 MobiDBLite consensus disorder prediction 617 640 - -
Gso4g1875 640 PANTHER RECEPTOR-LIKE KINASE 3 640 - -
Gso4g1875 640 ProSiteProfiles Protein kinase domain profile. 344 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g1875 640 SUPERFAMILY L domain-like 37 227 - -
Gso4g1875 640 Gene3D Ribonuclease Inhibitor 29 140 IPR032675 -
Gso4g1875 640 Pfam Protein kinase domain 348 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g1875 640 Pfam Leucine rich repeat N-terminal domain 28 66 IPR013210 -
Gso4g1875 640 Gene3D Ribonuclease Inhibitor 141 231 IPR032675 -
Gso4g1875 640 Gene3D Transferase(Phosphotransferase) domain 1 420 637 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1875 Gso-Chr4 49019219 49024484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1875 5 636 Receptor kinase-like Gene Family AT5G58300 58.150 0.0 725
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gso4g1875 Pkinase 9.6e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1875 - - gmx:100813074 1260.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g1875 2 42955997 42960408 Gso4g1875 4 49019219 49024484 PCT
Gso4g1875 4 49019219 49024484 Gso2g1875 2 42955997 42960408 PCT