Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1870 ATGAGTATTCTCTTCCCAAGAAGTTCCTCAGCAACAAAGAGGAAAAGGGTCATTAGAGAACTTGTTCAGGGTCGAGATTATGCCACTCAGCTCAAGTTTCTGCTTCAGAAGCCTATTGGCCCTGACGGGTCTGTTTCAGCCAAGGAACTTGTGGCCAATGTGCTGAGATCTTTCACTGAAACTCTCTCTGTGTTGACTTCTTCCGAGGTTGCAATAAGTGGTGATCATCATCGTGACGAAGTTGCTCAGAATCTTGTAATTTCCGGAGAAGATGCCTCGCAGGTGGAAAGCATTGATCCGAGGTCTGAGGGTTCAACTGAGAGTAAGAAGGGATCAAAGGATCGGAGAGGGTCCTATAAAAGAAGGAAGACTGAACAGACATGGACCATAGTTGCCCAAACTACTGATGATAATCATGCATGGAGAAAGTACGGACAAAAGGAAATCCTAAATTCTCAATTTCCCAGGAGTTACTTCAGGTGCACTAGGAAGTTTGAACAAGGTTGCCGAGCAACCAAACAAGTGCAACGGATACAAGAGAATCCTGATATGTACACCATTACGTACATTGGCTTTCACACATGCAAAGACACCCTCAAGGCTCCACAAATGGTGACACATTCTGAAACTTGGGACTCATTTCTTGGTCCTGACGCAAATGATGTGCCGAATGAACATGATTCCACTATTGGATCACAAAGCCTGATTGTAAAACAAGAATATCCCAACGATGAGACTGATCCAAGTGATCTCACAGATGCTAACTTTTGGTCTGATTTCAAGGATTTTGAACTATCCAATGACAAGCCTGCAGGTTTGAAAATAGCATCTGAAAATGCAGATACTGTGTATTCATGCACTGGCTCGAGAAGTTTGGACATGGATTTTGGGATATTCTCTTCTCATTTCTGCAGCACCGAGGACTTCCACTTTGATGAAAGCCAATTGCTTTAG 954 0.435 MSILFPRSSSATKRKRVIRELVQGRDYATQLKFLLQKPIGPDGSVSAKELVANVLRSFTETLSVLTSSEVAISGDHHRDEVAQNLVISGEDASQVESIDPRSEGSTESKKGSKDRRGSYKRRKTEQTWTIVAQTTDDNHAWRKYGQKEILNSQFPRSYFRCTRKFEQGCRATKQVQRIQENPDMYTITYIGFHTCKDTLKAPQMVTHSETWDSFLGPDANDVPNEHDSTIGSQSLIVKQEYPNDETDPSDLTDANFWSDFKDFELSNDKPAGLKIASENADTVYSCTGSRSLDMDFGIFSSHFCSTEDFHFDESQLL* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1870 317 ProSiteProfiles WRKY domain profile. 136 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso4g1870 317 Gene3D WRKY domain 120 190 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso4g1870 317 PANTHER WRKY DNA-BINDING TRANSCRIPTION FACTOR 70 6 302 - -
Gso4g1870 317 MobiDBLite consensus disorder prediction 102 123 - -
Gso4g1870 317 SMART WRKY_cls 135 197 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso4g1870 317 MobiDBLite consensus disorder prediction 92 124 - -
Gso4g1870 317 SUPERFAMILY WRKY DNA-binding domain 132 196 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso4g1870 317 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 6 302 IPR044810 GO:0003700
Gso4g1870 317 Pfam WRKY DNA -binding domain 136 196 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1870 Gso-Chr4 48967997 48970561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1870 9 206 WRKY Transcription Factor Family AT3G56400 41.872 7.46e-45 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso4g1870 WRKY 1.1e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1870 - - gmx:100170683 637.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1566 14 47507318 47512144 Gso4g1870 4 48967997 48970561 PCT
Gso4g1870 4 48967997 48970561 Gso14g1566 14 47507318 47512144 PCT