Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1868 ATGGCTGCAAGTTCTTCTTCAAATTGGGTCATGGAAAGTGGTGATGTTCCTCATGTTTTGGCCGTTGATGACAACCTTATTGATCGCAAACTCGTTGAGAAACTCCTGAGGAATTCTTCTTGCAAAGTTACAACTGCAGAAAATGGGCCAAGGGCATTGGAGTTATTGGGCTTGACAAGTGGTGGACAGAACAACATGAACGGTAGATCCAAAGTAAATATGATAATCACAGACTATTGCATGCCAGGGATGACAGGCTACGAGCTACTTAAGAAAATTAAGGAATCGTCTGTAATGAAGGAGGTTCCAGTAGTGATCATGTCATCTGAGAACATACCAACACGGATTAACAAGTGTCTGGAAGAAGGAGCTCAGATGTTCATCCTAAAGCCCCTCAAACAATCTGATGTAAGAAAACTGACATGTCAGTTAATGAATTGA 441 0.415 MAASSSSNWVMESGDVPHVLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRALELLGLTSGGQNNMNGRSKVNMIITDYCMPGMTGYELLKKIKESSVMKEVPVVIMSSENIPTRINKCLEEGAQMFILKPLKQSDVRKLTCQLMN* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1868 146 ProSiteProfiles Response regulatory domain profile. 18 145 IPR001789 GO:0000160
Gso4g1868 146 SUPERFAMILY CheY-like 17 145 IPR011006 -
Gso4g1868 146 SMART REC_2 17 141 IPR001789 GO:0000160
Gso4g1868 146 Gene3D - 18 146 - -
Gso4g1868 146 PANTHER TWO-COMPONENT RESPONSE REGULATOR 6 145 IPR045279 GO:0009736
Gso4g1868 146 Pfam Response regulator receiver domain 19 139 IPR001789 GO:0000160
Gso4g1868 146 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR17-LIKE 6 145 - -
Gso4g1868 146 CDD REC_typeA_ARR 19 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1868 Gso-Chr4 48942579 48944253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1868 18 146 Response Regulator Gene Family AT3G56380 74.046 6.66e-63 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso4g1868 Response_reg 1.1e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1868 K14492 - gmx:100499827 290.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1531 14 46810312 46811505 Gso4g1868 4 48942579 48944253 PCT
Gso2g1817 2 42084478 42085750 Gso4g1868 4 48942579 48944253 PCT