Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1865 ATGAAAATCAGCAAGAATAAGGGTCTCAAGCCTGAACAAGAAAAGGCTTCTAATTCAAACAATGGGGTGTTGATGGATTTCATGAAGCTTTCAAAGGATGACAAGGCTCAAGAACAACCATCAAGTAAGGTGGTGGTTGATTCATCTCTTTGTGACTCTAAAGGAGCAGATGATGAGAAGAATACAAAGGAAGCAAAGACTTTCTCATGCAACTATTGCAAGAGAGAGTTTTCTACCTCGCAAGCTTTGGGGGGACACCAAAACGCTCATAAACAAGAACGTGCTCTTGCAAAATGTGCCCAAGGCTTTGATGTTGGTGGCTTTGGACACTTTCCTTACTACCCTTATCCTAGTTTTTACAACTCTCATTCTCCTTATGGAGGATCTTTCAATAGGGCACTCGGGGTCCAAACTGATTCCATGATTCACAAGCATCCTTGGACCCCAAGGTATGGTCATTCTTGGTTGAAACAAGATCGTGTGACGATACCGAATTCGTCAATATTTGATGGGTTTGAAATTGTGAAAGGTTATTATCCAATTATGAAGAGTGATGGAACTCTTACTTTAAGGCAAGAGAATGGTAATGGTAATGCCAATGTTGGAACACTTTCTCTTTTTGCAAATTATGCTACCAATTCATCAAGCCAAGTCATAAACAGTGATGGCAATGCCAATGTTGGAACACTTTCTCTTTTTGCAAATGCTGCCACCACTCCATCAAGCCAACTTGGACACAGAGCAATTCTTGCAACCAAAAAAATTGATGATTATTCCATGCCAGAAGAAACCTCCAAAGGAGTATCTTCCAATCTTGATTTGTCACTTAAGCTTTAA 837 0.4014 MKISKNKGLKPEQEKASNSNNGVLMDFMKLSKDDKAQEQPSSKVVVDSSLCDSKGADDEKNTKEAKTFSCNYCKREFSTSQALGGHQNAHKQERALAKCAQGFDVGGFGHFPYYPYPSFYNSHSPYGGSFNRALGVQTDSMIHKHPWTPRYGHSWLKQDRVTIPNSSIFDGFEIVKGYYPIMKSDGTLTLRQENGNGNANVGTLSLFANYATNSSSQVINSDGNANVGTLSLFANAATTPSSQLGHRAILATKKIDDYSMPEETSKGVSSNLDLSLKL* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1865 278 Gene3D Classic Zinc Finger 50 102 - -
Gso4g1865 278 PANTHER ZINC FINGER PROTEIN JAGGED 5 278 IPR045320 GO:0003700
Gso4g1865 278 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 95 IPR013087 -
Gso4g1865 278 MobiDBLite consensus disorder prediction 1 58 - -
Gso4g1865 278 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Gso4g1865 278 Pfam C2H2-type zinc finger 68 92 - -
Gso4g1865 278 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 5 278 - -
Gso4g1865 278 SUPERFAMILY beta-beta-alpha zinc fingers 65 95 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1865 Gso-Chr4 48905993 48906829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1865 62 144 C2H2 Transcription Factor Family AT5G10970 52.941 3.63e-18 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso4g1865 zf-C2H2_6 3.2e-06 CL0361