Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1864 ATGTCCTCCGAAGACATCACTCTCGTACCCGACCAGAGGATCGAGAACGGTCTCAATTCCCCTCTCGTCTTCCAAGACGACCCTCTCCGCTTCAATTGCCCCACCCCGCACCAGCGTCGGGTCGGGGACCCGCCTCCGAAGACCCGCGAACTTGGCGCCTTCATCGACGACAACAAGATGTTCATCGACCGCGACCGCTTCTTCGCCGCCGCCCAGAACCCCGAATTCCGCCGCTACGCCGACTGCTCCGCCCGCCGCGACCCGCCCCACGCCCGCAATTGGAGCGCCACAGACGATGACGAAGAGTCTGACGACGACGACGAAGATGACGACGACGATGAAGCGGATGACACCGAAGTAGGAGGACTCGTTGGTGATGGAACCAAAAGCGAACTTAACAACAACAACAACAACAACAACAACAACGGTGGCGCTAATTTACCTGCTGTTGCAAACGGGAAAGCCCACTCTTACGTTTCTGGAAGAGAGCTATTGGTGAAGGATGGTGGTGATATTGGGCAATTGGTGCATAGCATTGTGAGTGGTGGTGATGAAGATCATCGGCAAGAGGGGTTAGGTAAGTCTCAGAATTCAGTTACCGTTGCTGAAACTGACTGTGAGGAGTACTATTCGCACTATCTTCACGGCGGCGAAGGGGCTTCTGGGCAGAAAGTGATGGTGGATGATAGTGGTTGTGGGTTTAGTGGGAGGAAGGATGCTATGTATTCGAGCGAGTCAGGGGAGTCACTCAGGGCAATTCTTTCAGATCCTGTCACGGGTGCTCTTATGGATGATGCTATGATATTACCATGTGGACATTCATTTGGTGGAGGTGGAATAGAGCATGCTATTAGAATGAAAGCTTGCTGCACTTGTTCTCAACCCACAACTGAGGAATCAATATCTCCAAACCTATCACTCCGGATTGCTGTGCAGGCATATCGTCGTGAAGAGGAGTCACAATTTTACCGGTCACCTAAAAGAAGAAGAGAGAGATTTGATCAGGGTGGTTTTGGAGATTCAGTTGTTATGGAACCATCAAGGAGTAGAGGTGTTCAGTTTCCATTTGCTGTGATGGACCGGGTTATCATAAAGGGAAATAAAAGGACACCACAACGCTTTGTTGGGCGCGAAGCTATTGTTACAACGCAATGCCTGAATGGATGGTATGTGGTGAAGACATTGGACAATGCAGAGAGTGTAAAGTTGCAGTATCGATCCCTTGCCAAGGTTATGGATGATCCTTCAAAACCTGCAGCCTCCAGCAAGATGCCACCTAATTGGCTTTAG 1290 0.5078 MSSEDITLVPDQRIENGLNSPLVFQDDPLRFNCPTPHQRRVGDPPPKTRELGAFIDDNKMFIDRDRFFAAAQNPEFRRYADCSARRDPPHARNWSATDDDEESDDDDEDDDDDEADDTEVGGLVGDGTKSELNNNNNNNNNNGGANLPAVANGKAHSYVSGRELLVKDGGDIGQLVHSIVSGGDEDHRQEGLGKSQNSVTVAETDCEEYYSHYLHGGEGASGQKVMVDDSGCGFSGRKDAMYSSESGESLRAILSDPVTGALMDDAMILPCGHSFGGGGIEHAIRMKACCTCSQPTTEESISPNLSLRIAVQAYRREEESQFYRSPKRRRERFDQGGFGDSVVMEPSRSRGVQFPFAVMDRVIIKGNKRTPQRFVGREAIVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVMDDPSKPAASSKMPPNWL* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1864 429 ProSiteProfiles U-box domain profile. 249 321 IPR003613 GO:0004842|GO:0016567
Gso4g1864 429 MobiDBLite consensus disorder prediction 80 149 - -
Gso4g1864 429 MobiDBLite consensus disorder prediction 98 120 - -
Gso4g1864 429 MobiDBLite consensus disorder prediction 80 97 - -
Gso4g1864 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 249 319 IPR013083 -
Gso4g1864 429 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62 64 429 - -
Gso4g1864 429 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 64 429 - -
Gso4g1864 429 MobiDBLite consensus disorder prediction 128 147 - -
Gso4g1864 429 MobiDBLite consensus disorder prediction 1 49 - -
Gso4g1864 429 SUPERFAMILY RING/U-box 248 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1864 Gso-Chr4 48897571 48903020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1864 195 429 Plant U-box Gene Family AT5G05230 61.157 3.44e-90 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1864 - - gmx:100791099 806.979