LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso4g1861	ATGGCTCTTCACCACCGCTTGTTGCTTGTCGACACAAATTCAAGCTCACCTGCACCAAGCAGCATGAATAAGACAAGAGAGACTTTCACAGGCGATGCAAATTTTGACACCAACATGGTGATTATCTTGGCCGCGTTGCTTTGTGCACTTATATGTGCTTTGGGGCTCAACTCAATTGTGAGATGTGCTCTAAGATGCAGCCGCAGATTTGCTTTTGAGACCCCAGAGGAGACAGCGGCACGTTTGGTGGCGAAAGGCCTAAAAAAGAGTGCATTGCATCAGATCCCTATAGTTGTTTATGGTTCAGGTAGTGCTAGTATTGCAGCCACAGACTGTCCAATTTGCCTTGGGGAGTTTGTGGATGGGGAGAAAGTTAGAGTGTTGCCAAAATGTAACCATAGATTCCATGTAAGGTGCATAGATACATGGCTCCTCTCACACTCCTCTTGTCCTAACTGCAGACAATCTTTGCTTGAGCATACAACTATTTCTGGAGCTGTAGCTGTAGCTGCAGGAACCAGTCATCATGCGGGGAATGCCTTGGGAGGACGACATCAACATGAGTCTTTATCTGTGGCTGTGGAAGTGGTTGGCTAA	597	0.469	MALHHRLLLVDTNSSSPAPSSMNKTRETFTGDANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETPEETAARLVAKGLKKSALHQIPIVVYGSGSASIAATDCPICLGEFVDGEKVRVLPKCNHRFHVRCIDTWLLSHSSCPNCRQSLLEHTTISGAVAVAAGTSHHAGNALGGRHQHESLSVAVEVVG*	199

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso4g1861	198	ProSiteProfiles	Zinc finger RING-type profile.	112	154	IPR001841	-
	Gso4g1861	198	PANTHER	RING-H2 FINGER PROTEIN ATL74	8	194	-	-
	Gso4g1861	198	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	86	163	IPR013083	-
	Gso4g1861	198	PANTHER	RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED	8	194	-	-
	Gso4g1861	198	SUPERFAMILY	RING/U-box	111	161	-	-
	Gso4g1861	198	SMART	FANCL_C_2	108	161	-	-
	Gso4g1861	198	SMART	ring_2	112	153	IPR001841	-
	Gso4g1861	198	CDD	RING-H2_PA-TM-RING	111	154	-	-
	Gso4g1861	198	Pfam	Ring finger domain	111	154	IPR001841	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso4g1861	Gso-Chr4	48880793	48882662	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso4g1861	6	158	C3H Transcription Factor Family	AT3G10910	60.870	1.64e-59	182

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso4g1861	4	48880793	48882662	Gso6g1208	6	11726449	11728265	GST