Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1860 ATGTCGTTTTCTCACCACCGTCGATCTCAATCGGAGATGCATTTCCGGATCAGCGACGACTTCGACCTCGAGGTCGATCTCTCTCCGTCGCATCATTTCCAAGATCCGGCCCCGCTCCTCCAAGATTCCGGATCCATACCCCAATCTCCGCAACCCGAAACCGCCCGCTCCGCTCACCAGAGAAGCAACTCCGCCGACGCCTCTTCCTCCTCGTTGGTCGACGGCATTGAGGCCAAGAAGGCCTTGTCCCCTGATAAGCTCGCTGAATTGTGGACCGCTGATCCCAAACGAGCCAAGAGGATTCTGGCTAACCGCCAATCCGCGGCTCGCTCCAAAGAGAGGAAAGCCTGTTACGTGTTGCAGCTTGAGAGAAAATTTCAATCTCTTCAAACCGAAGCAACCGCTCTTTGTGCCCGATTAAGTCTTTTTCAGAGAGATACAACTGGTCTGACTACTGAAAATACAGAGTTGAAGCTTAGGTTACAAGCCATGGAACAACAAGCTAACTTATGTGATGCTCTAAATGAAGCACTGAAGAAAGAAGTTGATGGGCTCAAGATTGCAACTGGCGAGATAGTAATGCATAATGCCCATGGTTTGGGAATGCATCCACTTACATATTCTCAGGCTCCATTCTTCTCACATCAGTCACAACATGGGCAGAGTGAACTTCAGGCCATGCAAATGCCACAGTTGCATTCACTCTCATCTAATGTGCCTACTTCCGATGAGCCTCTGTTTGATCTAGACATTCCGTATGATTTGTCAGAAATGTTGTCAAGTGAATCTATCGGCCAATTTCAGGGGCTGGACATAGGCGACGGGGTTTTGCATAATCTGATGCCTGATTGTCCCTCCATTTCTGTTAATAATATTAACAATGCCTTTTGA 891 0.4837 MSFSHHRRSQSEMHFRISDDFDLEVDLSPSHHFQDPAPLLQDSGSIPQSPQPETARSAHQRSNSADASSSSLVDGIEAKKALSPDKLAELWTADPKRAKRILANRQSAARSKERKACYVLQLERKFQSLQTEATALCARLSLFQRDTTGLTTENTELKLRLQAMEQQANLCDALNEALKKEVDGLKIATGEIVMHNAHGLGMHPLTYSQAPFFSHQSQHGQSELQAMQMPQLHSLSSNVPTSDEPLFDLDIPYDLSEMLSSESIGQFQGLDIGDGVLHNLMPDCPSISVNNINNAF* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1860 296 CDD bZIP_plant_RF2 97 146 IPR044759 GO:0003700|GO:0006355
Gso4g1860 296 PANTHER BZIP TRANSCRIPTION FACTOR 18 2 35 - -
Gso4g1860 296 PANTHER BZIP TRANSCRIPTION FACTOR 18 53 292 - -
Gso4g1860 296 MobiDBLite consensus disorder prediction 27 72 - -
Gso4g1860 296 MobiDBLite consensus disorder prediction 41 71 - -
Gso4g1860 296 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 53 292 - -
Gso4g1860 296 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 2 35 - -
Gso4g1860 296 Gene3D - 95 148 - -
Gso4g1860 296 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 94 157 IPR004827 GO:0003700|GO:0006355
Gso4g1860 296 Pfam bZIP transcription factor 96 148 IPR004827 GO:0003700|GO:0006355
Gso4g1860 296 SUPERFAMILY Leucine zipper domain 96 150 IPR046347 GO:0003700|GO:0006355
Gso4g1860 296 Coils Coil 161 181 - -
Gso4g1860 296 SMART brlzneu 92 156 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1860 Gso-Chr4 48871000 48874613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1860 5 272 bZIP Transcription Factor Family AT2G40620 47.003 8.20e-69 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso4g1860 bZIP_1 6.5e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1860 - - gmx:100807712 577.785