Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1848 ATGTTACATAAGAACAGCCTAGAACCAACCCGACACGAGCAAAGAGAGATGGGAACCGTTAGTAACATTGGCTTCCCTTCACTATTCAGAGTTCATCTAGATTCACAAGTACTATCAAAGCATATGAAGAATAAATCATCGTGCGATTTTATGGTTCCTTCTAATCATAACTACTCTGTTAGGCTGAGTCCAATATGTTGTAAGCTATCAGAAAGTGGGATTGAGGAGAACCACACGAGCACGAGCACGGGCAAGAGGCCCTCTAAGATCAAGGACAGGATGGAGGAGTACAATATAGCTATGAAGAAAATGATGAGGAACCCTTATGAGTATCACCATGATCTGGGTATGAATTATACTCTTATAACGGACAATTTGATTGTTGGCTCCCAACCACAGAAACCTGAAGACATAGATCACCTCAAAAAGGAAGAGGGTGTGGCATACATTTTAAACTTGCAACAAGATAACGATGTTGAGTATTGGGGAGTAGACTTGCAGTCAATAATAAGAAGGTCTCGTGAACTTGAAATTAGCCACACAAGGAGACCGGCAAAAGACTTTGATCCAGATTCCTTGCGAAATGAACTACCTAAAGCAGTCTCATCCTTAGAATGGGCAATTTCTGAGGGAAAAGGAAGAGTTTATGTGCATTGTACTGCTGGACTTGGAAGAGCTCCAGCGGTGGCAATTGCTTATTTGTTCTGGTTTTGTGACATGAATCTAAATGAAGCATATGATATGCTAACTTCAAAGAGACCTTGTGGACCAAATAAAAGAGCAATACGTGGCGCTACTTATGATTTGGCTAAGAATGATCCTTGGAAGGAGCCATTTGAGACTCTTCCAGAATATGCATTTGAGGATATAGCAGATTGGGAAAGGAACTTGATTCAAGATCGTGCCCGCTCCCTTCGTGGAATTTGA 927 0.4142 MLHKNSLEPTRHEQREMGTVSNIGFPSLFRVHLDSQVLSKHMKNKSSCDFMVPSNHNYSVRLSPICCKLSESGIEENHTSTSTGKRPSKIKDRMEEYNIAMKKMMRNPYEYHHDLGMNYTLITDNLIVGSQPQKPEDIDHLKKEEGVAYILNLQQDNDVEYWGVDLQSIIRRSRELEISHTRRPAKDFDPDSLRNELPKAVSSLEWAISEGKGRVYVHCTAGLGRAPAVAIAYLFWFCDMNLNEAYDMLTSKRPCGPNKRAIRGATYDLAKNDPWKEPFETLPEYAFEDIADWERNLIQDRARSLRGI* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1848 308 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 195 254 IPR000387 GO:0016311|GO:0016791
Gso4g1848 308 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF2, CHLOROPLASTIC 19 307 - -
Gso4g1848 308 Gene3D Protein tyrosine phosphatase superfamily 101 308 IPR029021 -
Gso4g1848 308 Pfam Dual specificity phosphatase, catalytic domain 139 258 IPR000340 GO:0008138|GO:0016311
Gso4g1848 308 ProSiteProfiles Dual specificity protein phosphatase domain profile. 118 275 IPR020422 GO:0006470|GO:0008138
Gso4g1848 308 CDD DSP_laforin-like 117 264 IPR045204 GO:0019203|GO:0046838
Gso4g1848 308 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 19 307 - -
Gso4g1848 308 SMART dsp_5 118 268 IPR020422 GO:0006470|GO:0008138
Gso4g1848 308 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 115 260 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1848 Gso-Chr4 48763011 48766289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1848 42 307 Protein tyrosine phosphatase (PTP) family AT3G10940 71.053 5.04e-142 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1848 - - gmx:100805592 635.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1848 4 48763011 48766289 Gso6g1222 6 11867314 11870645 GST