Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1844 ATGTCCAGAGAAAGGGAGAGATTTGATGAGATAGGGAAGAAGATCAAGAGGGAAGGAGATGTTTCATCTCAAATGGGAAGAAGACACATGTTAGGCCCTCCAGGAACCCTAAATACTATCACCCCTTGTGCGGCATGTAAGTTGTTGAGAAGAAGATGTGCCCAAGAATGTCCCTTTTCTCCATATTTCTCTCCCCATGAGCCCCAAAAATTTGCTTCTGTCCACAAAGTTTTTGGTGCCAGCAACGTCTCAAAGATGCTCATGGAAGTACCAGAGTGTCAAAGAGCTGATGCAGCAAATAGTCTAGTATATGAGGCTAATGTGAGGCTAAGAGATCCTGTGTATGGATGCATGGGTGCAATTTCTGCTTTGCAACAGCAAGTTCAATCTTTACAAGCTGAACTTAATGCAGTGAGAGGTGAAATACTTAAATACAAACTCAGGGAAGCTAACATGATACCCTCCTCTCATGTTGCAATGCTCCCTTCATCTGGGGCTGTTTCAATTGCTGCTCCACCGCCGCCGCCGCCACCACCACCACCTCTTCCTCCTCCTTCTCTTCCTCTTCCTCTTCCTCTAACTTCTTCCCCTCCTTCCATGTACATCCAACAAAGGGATCCCACCACTTATACCACAATTTCAAGTGATAATATCTCCTATTTTGTCTAA 669 0.4499 MSRERERFDEIGKKIKREGDVSSQMGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPECQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAELNAVRGEILKYKLREANMIPSSHVAMLPSSGAVSIAAPPPPPPPPPPLPPPSLPLPLPLTSSPPSMYIQQRDPTTYTTISSDNISYFV* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1844 222 MobiDBLite consensus disorder prediction 170 198 - -
Gso4g1844 222 Coils Coil 121 148 - -
Gso4g1844 222 PANTHER LOB DOMAIN PROTEIN 25 221 - -
Gso4g1844 222 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 25 221 - -
Gso4g1844 222 MobiDBLite consensus disorder prediction 170 195 - -
Gso4g1844 222 ProSiteProfiles LOB domain profile. 41 142 IPR004883 -
Gso4g1844 222 Pfam Lateral organ boundaries (LOB) domain 42 138 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1844 Gso-Chr4 48704247 48705660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1844 27 169 AS2 family AT2G40470 85.034 3.59e-75 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gso4g1844 LOB 2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1844 - - gmx:100786324 388.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1844 4 48704247 48705660 Gso6g1226 6 11939026 11941142 GST