Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1831 ATGGACTTGGCCGCGAAGCTTCACCACTTAGACCTGACCGGCGTGGTCATTTTGGACGCCCGAAAGCCCTCCGCACTCCGCCACCTTCCGCCACGCGTTCTCAGCAGAACAAACACCAACACCAATTTGATTTACACGAACCGGTTCTCGGGCCCACCGAGGCCCAATTCCGCTTCCTCAACGGGCCTGTCCATGATAACCGTCGAGGACGATATCGAGTCTCTTTTCTCCGAGACGAACTCGGAGGAGGAGCGGCGCGTGAGGAAGCAACCGAGCATTGGGGCGTCGGGGATTTCCTCCGGGGTGAAGCTCGAAAACGTGGGGAAAGCCTACAAGGGCGTGACGGTGCTGAAGGACGTGAGCTGGGAGGTGAAGAAGGGGGAGAAGGTGGGCCTGGTCGGCGTGAACGGCGCCGGGAAGACGACGCAGATGAGGATAATCGCGGGCCTTGAGGAGCCGGATTTCGGGAACGTGGTGAAGGCGAAGGCGAACATGAAAATCGCGTTTCTGAACCAGGAGTTCGAGGTGGCGCCGAGCAGGACGGTGAGGGAGGAGTTCATGAACGCATTCAAGGAGGAGATGGAGGTGGCAGGGAAGCTGGAGAAGGTGCAGAAGGCGCTCGAGGGTGCCGTTAATGATTTGGAGCTCATGGGGAGGCTCTTGGATGAGTTCGATTTGCTTCAGAGGAGGGCGCAGAATGTGAACTTGGATGAGGTTGATGCCAAGATTAGTAAGTTGATGCCTGAGCTTGGTTTTGCTCCTGAGGATTCTGATAGGCTGGTCGCGTCTTTCAGTGGAGGCTGGCAGATGAGGATGTGTCTCGGCAAGATTCTACTTCAGGAGCCTGATTTGTTGCTGTTAGATGAGCCTACAAATCACCTTGATCTTGACACCATTGAGTGGCTTGAAGACTATCTTAACCAGCAGGATGTTCCAATGGTTATCATATCCCATGATCGAGCTTTTCTTGATCAGCTGTGTACAAAAATTGTGGAAACTGACATGGGTGTGTCCAGGACGTTTGAGGGGAATTACTCTCAGTATGTAATTTCAAAAGCAGCATGGATTGAAGCACAGTATGCTGCATGGGAGAAGCAGCAGAAAGAAATTGAGCAGACAAGAGACTTGATAAGTAGATTAGGTGCTGGAGCAAATTCTGGCCGTGCTTCTTCTGCCGAGAAGAAGCTGGAGAGACTTCAGGAAGAGGAACTAGTGGAGAAACCTTTTGAACGGAAACAAATGAAAATCAGGTTCCCTGAGCGTGGAAGGAGTGGAAGATCTGTTGTAGCAATTAATAACTTGGAATTTGGCTTTGAGGATAAGACACTTTTCAAAAAGGCAAATCTTACAATTGAAAGGGGAGAAAAAATTGCCATTATTGGTCCAAATGGATGTGGCAAGAGTACTTTACTGAAATTGATTATGGGTTTGGAAAAGCCAACCGGGGGTGAAGTTTTGCTTGGGGAGCATAATGTATTACCTAACTATTTTGAGCAGAATCAGGCTGAGGCACTTGATCTGGAAAAAACAGTGCTCGAGACAGTAGAGGAAGCTGCAGAGGACTGGAGGATTGATGATATTAAAGGGCTTCTTGGGCGTTGTAATTTTAAAGCTGATATGCTTGACCGAAAAGTTTCACTATTGAGTGGTGGTGAGAAGGCACGGCTGGCCTTTTGCAAATTCATGGTAAAGCCATCAACTATGCTTGTGTTGGATGAACCAACCAATCACTTGGATATACCTTCTAAAGAAATGCTCGAGGAAGCAATAAATGAATACCAGGGCACTGTTATCACAGTATCTCATGACCGATACTTTATAAAGCAAATAGTTAATAGAGTGATAGAAATTAAAGATGGCACCATACAGGATTATGCAGGTGATTACGATTATTATTTAGAGAAGAATTTTGATGCTAGGGAAAGAGAACTTGAACGCGAGGCTGAGCTTGATAGCAAAGCTCCTAAAGTGAAAGCCAAATCTAAGATGTCCAAGGCTGAGAAAGAGGCACGGAAGAAACAAAAGATGCAGGCCTTTCAGGCAGCAAAACAGAAGTCCAAAGGCGTGAAAAATGCCAAGAGATGGAATTGA 2091 0.4782 MDLAAKLHHLDLTGVVILDARKPSALRHLPPRVLSRTNTNTNLIYTNRFSGPPRPNSASSTGLSMITVEDDIESLFSETNSEEERRVRKQPSIGASGISSGVKLENVGKAYKGVTVLKDVSWEVKKGEKVGLVGVNGAGKTTQMRIIAGLEEPDFGNVVKAKANMKIAFLNQEFEVAPSRTVREEFMNAFKEEMEVAGKLEKVQKALEGAVNDLELMGRLLDEFDLLQRRAQNVNLDEVDAKISKLMPELGFAPEDSDRLVASFSGGWQMRMCLGKILLQEPDLLLLDEPTNHLDLDTIEWLEDYLNQQDVPMVIISHDRAFLDQLCTKIVETDMGVSRTFEGNYSQYVISKAAWIEAQYAAWEKQQKEIEQTRDLISRLGAGANSGRASSAEKKLERLQEEELVEKPFERKQMKIRFPERGRSGRSVVAINNLEFGFEDKTLFKKANLTIERGEKIAIIGPNGCGKSTLLKLIMGLEKPTGGEVLLGEHNVLPNYFEQNQAEALDLEKTVLETVEEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTMLVLDEPTNHLDIPSKEMLEEAINEYQGTVITVSHDRYFIKQIVNRVIEIKDGTIQDYAGDYDYYLEKNFDARERELEREAELDSKAPKVKAKSKMSKAEKEARKKQKMQAFQAAKQKSKGVKNAKRWN* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1831 696 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 429 644 IPR003439 GO:0005524
Gso4g1831 696 MobiDBLite consensus disorder prediction 646 676 - -
Gso4g1831 696 ProSitePatterns ABC transporters family signature. 548 562 IPR017871 GO:0005524
Gso4g1831 696 MobiDBLite consensus disorder prediction 646 696 - -
Gso4g1831 696 Gene3D - 391 658 IPR027417 -
Gso4g1831 696 SMART AAA_5 126 341 IPR003593 -
Gso4g1831 696 SMART AAA_5 453 621 IPR003593 -
Gso4g1831 696 Pfam ABC transporter 445 576 IPR003439 GO:0005524
Gso4g1831 696 Pfam ABC transporter 117 292 IPR003439 GO:0005524
Gso4g1831 696 Gene3D - 99 383 IPR027417 -
Gso4g1831 696 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 51 686 - -
Gso4g1831 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 337 IPR027417 -
Gso4g1831 696 Pfam ABC transporter 331 418 IPR032781 -
Gso4g1831 696 CDD ABCF_EF-3 431 621 - -
Gso4g1831 696 ProSitePatterns ABC transporters family signature. 264 278 IPR017871 GO:0005524
Gso4g1831 696 PANTHER ABC TRANSPORTER F FAMILY MEMBER 5 51 686 - -
Gso4g1831 696 Coils Coil 656 685 - -
Gso4g1831 696 CDD ABCF_EF-3 102 332 - -
Gso4g1831 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 409 635 IPR027417 -
Gso4g1831 696 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 102 360 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1831 Gso-Chr4 48582712 48587847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1831 426 646 Calmodulin-binding Proteins AT2G36910 25.506 3.34e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1831 - - gmx:100796907 1288.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1831 4 48582712 48587847 Gso6g1239 6 12051383 12056281 GST