Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1829 ATGGATTACTATTTTGGAAACCCTAATCCTAAACCTTATGATAACCGTCACTCTGCCGTAGTAAACACGGAATCTCCTTCCTCCGAGTTCATGCTATCTGATTATCTCGTGTTGGAAGATGCTGTCGATAATCAAGAGTCTTGGTCACAAAGCACTGAAACTGAATCATCGGAGAAAGGAAACTCCAGCGATGTCAGTCATGGGTTTGGTGATGCAACCTTCAGCAACACCAACATGCATATAAAGTGCGAAAATAATGGGATAAAGCGAAAGAAGGAAGAAGTGAGTCAAATGATCACGTTTAGAACCAGATCGCAGCTTGAGGTTATGGATGATGGATATAAATGGAGGAAATACGGAAAGAAGACAGTGAAGAACAATCCCAACCCAAGGAACTACTACAAGTGTTCAGGTGAAGGATGCAATGTGAAGAAAAGGGTGGAAAGAGACAGGGATGACTCGAACTATGTTTTAACAACGTACGACGGTGTCCACAATCATGAGAGCCCGTCGACTGCCTACTACAGCCAAATTCCCTTGGTGCATTCTAACCATGATTGGCCCCAGCTGCACCCTTCTGCAAACTCATGA 591 0.4382 MDYYFGNPNPKPYDNRHSAVVNTESPSSEFMLSDYLVLEDAVDNQESWSQSTETESSEKGNSSDVSHGFGDATFSNTNMHIKCENNGIKRKKEEVSQMITFRTRSQLEVMDDGYKWRKYGKKTVKNNPNPRNYYKCSGEGCNVKKRVERDRDDSNYVLTTYDGVHNHESPSTAYYSQIPLVHSNHDWPQLHPSANS* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1829 196 Pfam WRKY DNA -binding domain 111 168 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso4g1829 196 SMART WRKY_cls 110 169 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso4g1829 196 Gene3D WRKY domain 94 171 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso4g1829 196 MobiDBLite consensus disorder prediction 43 73 - -
Gso4g1829 196 ProSiteProfiles WRKY domain profile. 105 170 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso4g1829 196 PANTHER WRKY TRANSCRIPTION FACTOR 50-RELATED 11 175 - -
Gso4g1829 196 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 11 175 IPR044810 GO:0003700
Gso4g1829 196 SUPERFAMILY WRKY DNA-binding domain 102 170 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1829 Gso-Chr4 48570810 48573515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1829 91 189 WRKY Transcription Factor Family AT5G64810 62.626 1.89e-43 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso4g1829 WRKY 6.4e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1829 - - gmx:732584 409.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1829 4 48570810 48573515 Gso6g1241 6 12062454 12065942 GST