Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1827 ATGATGTCAACAACATCCCAAACTAATGTTAACCATAGCTTGTTTGAAGAGCAAGATCAGATCCCTACGCAGATGGGGTTGTTCAATATTCCTTTCCCACCAAACCAAACATACCCTCCTTTGGGTTGCCAAACAGGCACTTTGAAATCCATCAGTGCAATAGCTCCTTCACTTTCATCTGCTACAAGTTTTTCTGAAACCCTACTTTCAACCGCAGTTCAAAGACCACGAGAAGATCTCACTTCAAATTTGCTAGCTGGAGGAGGAGGCCAACTCCTTTCCTTGAGCAGATCCAGAGTGAATTCATGGGCATGGGAAGAAGTAAGCGATTGTTTGATGGGTAAAAGAATTGGAGGAGATGATAATCATCATCTAGGGGTTTCTGCCATGAAGATGAAGAAAATGAAAGCAAGGAGAAAGGTGAGGGAGCCAAGGTTTTGCTTCAAGACTATGAGCGATGTAGATGTGTTGGATGATGGCTACAAGTGGAGGAAGTACGGACAGAAAGTGGTAAAGAACACACAACACCCGAGCTACTACCGTTGCACACAAGATAACTGTCGAGTAAAGAAACGCGTGGAGCGCTTGGCAGAGGATCCAAGGATGGTGATAACCACATATGAAGGGAGACACGTGCACTCGCCATCAAATGAACTTGAAGACTCGCAAACCCCTTCTGAACTTAGTAATTTCTTGTGGTAG 702 0.4444 MMSTTSQTNVNHSLFEEQDQIPTQMGLFNIPFPPNQTYPPLGCQTGTLKSISAIAPSLSSATSFSETLLSTAVQRPREDLTSNLLAGGGGQLLSLSRSRVNSWAWEEVSDCLMGKRIGGDDNHHLGVSAMKMKKMKARRKVREPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHSPSNELEDSQTPSELSNFLW* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1827 233 Pfam WRKY DNA -binding domain 158 213 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso4g1827 233 SUPERFAMILY WRKY DNA-binding domain 149 215 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso4g1827 233 MobiDBLite consensus disorder prediction 208 233 - -
Gso4g1827 233 SMART WRKY_cls 157 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso4g1827 233 MobiDBLite consensus disorder prediction 218 233 - -
Gso4g1827 233 PANTHER WRKY TRANSCRIPTION FACTOR 13-RELATED 67 224 - -
Gso4g1827 233 ProSiteProfiles WRKY domain profile. 152 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso4g1827 233 Gene3D WRKY domain 144 209 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso4g1827 233 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 67 224 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1827 Gso-Chr4 48543906 48547168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1827 51 233 WRKY Transcription Factor Family AT4G39410 51.082 6.91e-61 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso4g1827 WRKY 2e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1827 - - gmx:100127389 454.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1827 4 48543906 48547168 Gso6g1245 6 12107640 12110791 GST