Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1826 ATGAAAGCTCTGTACAGAAGCTCTCTCTTGCTCTTGCTCTTGCTCTTCATCTCCGTGTGTTTTGCATCTTCTTCTTCTCCGGTCACTCAGCAACTCCTAAGCTTCAAAAACTCTCTCCCGAACCCATCCCTGCTCCCCAACTGGCTCCCTAACCAAAGCCCGTGCACATTCAGCGGCATCAGCTGCAACGACACAGAGCTCTCATCCATAGACCTCAGCTCCGTCCCTCTCAGCACTAACCTAACCGTCATCGCCATCTTCCTCCTTAGCCTGGACCACCTCCAGTCACTCTCCTTAAAATCCACCAACCTCTCCGGTCCCGCCGCCATGCCTCCTCTCTCCCACTCCCAGTGCTCCTCCTCATTAACCTCCCTAGATCTCTCCCAAAACTCCCTCTCTGCCTCCCTCAACGACATGTCGTTTCTCGCCTCCTGCTCCAACCTCCAATCCCTCAACCTCTCCTCCAACCTCCTCCAATTCGGCCCCCCGCCCCACTGGAAGCTCCACCACCTCCGCTTCGCCGACTTCTCTTACAACAAGATTTCCGGCCCCGGCGTCGTTTCTTGGCTTCTCAACCCCGTCATCGAACTCCTCTCTCTCAAAGGCAACAAAGTCACCGGCGAAACCGACTTCTCCGGCTCAATTTCTCTCCAGTATTTAGACCTTTCTTCCAACAACTTTTCTGTTACGCTTCCTACTTTCGGCGAGTGTTCTTCGCTTGAGTATTTGGACCTCTCCGCTAACAAGTACTTGGGCGACATTGCACGCACTCTCTCCCCTTGCAAGAGCCTCGTTTACCTTAACGTCTCCAGCAACCAGTTCTCCGGTCCGGTTCCTTCCCTTCCCTCCGGTTCGCTACAGTTTGTGTACCTTGCTGCAAACCACTTCCACGGCCAGATTCCTCTCTCCCTCGCCGACCTCTGCTCCACTCTCCTCCAGCTCGATCTCTCCTCCAACAATCTCACCGGCGCTCTTCCCGGCGCGTTCGGCGCGTGCACTTCTCTTCAATCCCTTGACATCTCCAGCAACCTCTTCGCCGGCGCGTTGCCGATGTCGGTTCTCACGCAAATGACCAGCCTGAAAGAGCTCGCGGTTGCGTTCAACGGCTTCCTCGGTGCTCTCCCGGAGTCTCTGTCGAAGCTCTCCGCTCTGGAGTTGCTGGATCTGAGCTCCAACAACTTTAGCGGCTCAATCCCCGCCTCGCTGTGCGGCGGCGGTGACGCTGGGATTAATAATAATCTGAAGGAACTTTATCTGCAGAATAACCGGTTCACGGGTTTTATTCCGCCCACGCTCAGCAACTGTTCAAACCTCGTTGCTTTGGACTTGAGTTTCAACTTCCTCACGGGGACTATTCCTCCGAGCCTAGGGTCTCTTTCGAATCTCAAAGACTTCATCATCTGGCTCAACCAGCTCCACGGGGAGATACCGCAGGAGCTCATGTATCTTAAAAGCCTCGAGAATTTGATCCTGGATTTCAACGACTTGACTGGGAACATTCCCTCTGGCCTCGTTAACTGCACCAAGTTGAACTGGATCTCCCTCTCCAACAACAGGCTCAGCGGCGAGATTCCGCCGTGGATTGGGAAGCTTTCTAATCTCGCCATACTCAAGCTCAGCAATAACTCTTTCTCCGGCCGGATTCCGCCGGAGCTCGGCGACTGTACTAGTTTAATATGGTTGGATCTGAATACAAATATGCTCACCGGGCCCATTCCGCCGGAGCTGTTCAAGCAGTCGGGGAAGATCGCCGTGAATTTCATCAGTGGGAAGACGTATGTGTATATAAAGAACGATGGGAGCAAGGAGTGCCATGGTGCGGGGAACTTGCTTGAGTTTGCGGGGATCAGTCAGCAGCAGCTGAACAGGATTTCGACGAGGAACCCCTGCAATTTCACTAGGGTTTATGGAGGTAAGTTGCAGCCAACGTTTAACCATAATGGTTCTATGATATTTTTGGATATCTCGCACAACATGTTGTCAGGGAGTATTCCCAAGGAGATTGGGGCCATGTACTATTTGTACATTCTCAATTTGGGTCACAATAATGTGTCTGGGAGCATTCCTCAAGAGCTTGGGAAGATGAAGAATCTCAACATTCTTGATCTGTCGAATAATAGACTGGAGGGCCAAATTCCGCAGAGCCTCACGGGGCTTTCTTTGCTCACTGAGATTGACTTGTCCAACAACTTGCTTACCGGGACGATTCCTGAGTCGGGTCAATTTGATACTTTCCCTGCGGCGAAGTTTCAGAACAACTCTGGTCTATGTGGAGTTCCTCTGGGTCCGTGTGGTTCGGAGCCGGCAAACAATGGAAATGCGCAACATATGAAGTCTCACAGGAGGCAGGCTTCTCTGGCGGGGAGTGTGGCCATGGGGTTGTTGTTTTCCCTCTTTTGCGTCTTTGGTTTGATCATTATTGCCATTGAGACCAGGAAGAGGAGGAAGAAGAAGGAGGCTGCTCTTGAAGCCTATGGTGATGGTAATTCCCATTCGGGTCCGGCCAATGTGAGCTGGAAGCACACCAGTACTCGGGAAGCTCTTAGCATAAACCTTGCAACATTTGAGAAGCCGCTCCGGAAGCTTACTTTTGCGGACCTTCTTGACGCTACCAATGGTTTTCACAACGACAGTCTCATTGGCTCTGGCGGGTTTGGGGACGTGTACAAGGCTCAGTTGAAGGATGGAAGTGTTGTGGCTATCAAGAAGCTGATTCATGTTAGCGGACAAGGGGACAGGGAATTCACCGCTGAAATGGAGACTATTGGGAAAATCAAGCACAGGAACCTTGTTCCCCTGTTGGGATACTGCAAGGTAGGGGAAGAGAGGCTCTTGGTTTATGAGTACATGAAATATGGAAGTTTAGAGGATGTTCTACATGATCAGAAGAAAGCTGGGATCAAGCTGAACTGGGCCGTTAGGCGGAAAATTGCTATTGGAGCTGCTAGGGGATTGGCTTTTCTTCACCACAATTGTATCCCCCACATCATTCATAGAGATATGAAGTCGAGCAATGTGTTACTTGATGAAAACCTGGAAGCCAGAGTCTCTGATTTTGGAATGGCTAGGCTTATGAGTGCTATGGATACACATTTGAGTGTGAGCACATTGGCTGGCACACCGGGGTATGTTCCTCCCGAGTACTATCAGAGCTTCAGATGCTCCACAAAAGGTGATGTCTACAGTTATGGTGTGGTTTTGTTGGAGCTGCTAACTGGGAAAAGGCCAACGGACTCGGCTGATTTTGGAGATAATAATCTTGTTGGATGGGTTAAACAACATGCCAAGCTGAAAATCAGTGATATTTTTGACCCGGAGCTCATGAAGGAAGACCCCAATCTGGAGATGGAGCTTTTGCAGCACTTGAAGATTGCGGTTTCCTGTTTGGATGATCGACCGTGGAGGCGTCCGACGATGATTCAAGTGATGGCAATGTTCAAGGAGATTCAGGCGGGATCCGGGATTGATTCTCAGTCAACCATAGCCAATGACGAGGAAGGTTTCAATGCAGTTGAAATGGTGGAGATGAGCATTAAAGAAGCCCCTGAATTGAGCAAGCATTAG 3564 0.5076 MKALYRSSLLLLLLLFISVCFASSSSPVTQQLLSFKNSLPNPSLLPNWLPNQSPCTFSGISCNDTELSSIDLSSVPLSTNLTVIAIFLLSLDHLQSLSLKSTNLSGPAAMPPLSHSQCSSSLTSLDLSQNSLSASLNDMSFLASCSNLQSLNLSSNLLQFGPPPHWKLHHLRFADFSYNKISGPGVVSWLLNPVIELLSLKGNKVTGETDFSGSISLQYLDLSSNNFSVTLPTFGECSSLEYLDLSANKYLGDIARTLSPCKSLVYLNVSSNQFSGPVPSLPSGSLQFVYLAANHFHGQIPLSLADLCSTLLQLDLSSNNLTGALPGAFGACTSLQSLDISSNLFAGALPMSVLTQMTSLKELAVAFNGFLGALPESLSKLSALELLDLSSNNFSGSIPASLCGGGDAGINNNLKELYLQNNRFTGFIPPTLSNCSNLVALDLSFNFLTGTIPPSLGSLSNLKDFIIWLNQLHGEIPQELMYLKSLENLILDFNDLTGNIPSGLVNCTKLNWISLSNNRLSGEIPPWIGKLSNLAILKLSNNSFSGRIPPELGDCTSLIWLDLNTNMLTGPIPPELFKQSGKIAVNFISGKTYVYIKNDGSKECHGAGNLLEFAGISQQQLNRISTRNPCNFTRVYGGKLQPTFNHNGSMIFLDISHNMLSGSIPKEIGAMYYLYILNLGHNNVSGSIPQELGKMKNLNILDLSNNRLEGQIPQSLTGLSLLTEIDLSNNLLTGTIPESGQFDTFPAAKFQNNSGLCGVPLGPCGSEPANNGNAQHMKSHRRQASLAGSVAMGLLFSLFCVFGLIIIAIETRKRRKKKEAALEAYGDGNSHSGPANVSWKHTSTREALSINLATFEKPLRKLTFADLLDATNGFHNDSLIGSGGFGDVYKAQLKDGSVVAIKKLIHVSGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKYGSLEDVLHDQKKAGIKLNWAVRRKIAIGAARGLAFLHHNCIPHIIHRDMKSSNVLLDENLEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTDSADFGDNNLVGWVKQHAKLKISDIFDPELMKEDPNLEMELLQHLKIAVSCLDDRPWRRPTMIQVMAMFKEIQAGSGIDSQSTIANDEEGFNAVEMVEMSIKEAPELSKH* 1188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1826 1187 Gene3D Transferase(Phosphotransferase) domain 1 950 1151 - -
Gso4g1826 1187 SUPERFAMILY L domain-like 642 762 - -
Gso4g1826 1187 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 8 1161 - -
Gso4g1826 1187 PRINTS Leucine-rich repeat signature 311 324 - -
Gso4g1826 1187 PRINTS Leucine-rich repeat signature 695 708 - -
Gso4g1826 1187 Pfam Protein kinase domain 874 1144 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g1826 1187 SUPERFAMILY RNI-like 258 574 - -
Gso4g1826 1187 Pfam Leucine rich repeat N-terminal domain 30 63 IPR013210 -
Gso4g1826 1187 Pfam Leucine Rich Repeat 437 459 IPR001611 GO:0005515
Gso4g1826 1187 Pfam Leucine Rich Repeat 413 435 IPR001611 GO:0005515
Gso4g1826 1187 CDD STKc_IRAK 880 1149 - -
Gso4g1826 1187 SMART LRR_typ_2 719 744 IPR003591 -
Gso4g1826 1187 SMART LRR_typ_2 531 555 IPR003591 -
Gso4g1826 1187 SMART LRR_typ_2 695 718 IPR003591 -
Gso4g1826 1187 SMART LRR_typ_2 483 507 IPR003591 -
Gso4g1826 1187 SMART LRR_typ_2 381 405 IPR003591 -
Gso4g1826 1187 SMART LRR_typ_2 307 331 IPR003591 -
Gso4g1826 1187 SMART LRR_typ_2 413 435 IPR003591 -
Gso4g1826 1187 Gene3D - 586 646 - -
Gso4g1826 1187 Gene3D Ribonuclease Inhibitor 32 764 IPR032675 -
Gso4g1826 1187 ProSiteProfiles Protein kinase domain profile. 874 1149 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g1826 1187 ProSitePatterns Protein kinases ATP-binding region signature. 880 903 IPR017441 GO:0005524
Gso4g1826 1187 Pfam Brassinosteroid receptor island domain 581 645 IPR045381 -
Gso4g1826 1187 SUPERFAMILY Protein kinase-like (PK-like) 860 1151 IPR011009 -
Gso4g1826 1187 Pfam Leucine rich repeat 216 274 IPR001611 GO:0005515
Gso4g1826 1187 Pfam Leucine rich repeat 674 732 IPR001611 GO:0005515
Gso4g1826 1187 Pfam Leucine rich repeat 286 344 IPR001611 GO:0005515
Gso4g1826 1187 ProSitePatterns Serine/Threonine protein kinases active-site signature. 996 1008 IPR008271 GO:0004672|GO:0006468
Gso4g1826 1187 PANTHER SYSTEMIN RECEPTOR SR160 8 1161 - -
Gso4g1826 1187 ProSiteProfiles Leucine-rich repeat profile. 121 143 IPR001611 GO:0005515
Gso4g1826 1187 SUPERFAMILY L domain-like 28 280 - -
Gso4g1826 1187 SMART serkin_6 874 1146 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g1826 1187 Gene3D Phosphorylase Kinase; domain 1 835 949 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1826 Gso-Chr4 48525775 48529896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1826 30 1183 Receptor kinase-like Gene Family AT4G39400 69.007 0.0 1542
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Gso4g1826 Pkinase 9.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1826 K13415 - gmx:100499629 2242.23