Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1820 ATGATGAACAACCCTGCATTATTGTCAAGGCTGTTTCCGGGTATCAATAGGGAGAGGGAGATGTCTGCCATGGTCTCAGCTTTGACCCACGTTGTCTCCGGAGAGGTTCCAACCGGTGATTCTTCTTCAGTTCTTCATCATCAACCTCATGATGATGATGCTGTTACTGTTAAACCAAACATGCCTTCTACAACACCCTTTTCATCTACTTATGTTGTTGCCACCTCTTCTCTCAAGAGAAGTAGACAACATGATACATATACACCATCCTTCTCACATCCACCTTCATCATTCCCTGCTATGCCAACAAGTGCAGAATGTTCAAAGAGTGGAATGGGAAATGCTGTGTACGAATACAGAACAAGAGGAACAGAGAATGTAAAGAAGGAGGAGGGAAGGAGAAAATATAGAGGGGTGAGGCAGAGGCCGTGGGGAAAATGGGCAGCGGAGATAAGAGACCCATTCAAAGCAGCAAGAGTATGGTTAGGAACATTTGAGACGGCAGAGGCAGCAGCTAGAGCCTACGATGAAGCTGCCCTTCGTTTTAGGGGCAGCAAGGCCAAACTCAACTTCCCCGAGAATGTCACTCTCCGACAACCTCAATTCACTGTTTCCACATCAACAGACCCATTTCAACTCTCGGGTACCAACCTTTATGATCATAGGATGTTTCTGACTTCTAATACCATGGCTTCTCATCATCTTCAATCTTCTTTGCCGCTGCCACCAGCAACCTCCTCTTCTCTAACTTCTCCTCCTCAGAACATCACTTCACTTTCTTCCTTGTATTCTGCCCAGTTGCCCCCATGGTCGGCCTCTGCCTCTGGTCATAGCTCTTCTTCCTCCCCATGA 852 0.4695 MMNNPALLSRLFPGINREREMSAMVSALTHVVSGEVPTGDSSSVLHHQPHDDDAVTVKPNMPSTTPFSSTYVVATSSLKRSRQHDTYTPSFSHPPSSFPAMPTSAECSKSGMGNAVYEYRTRGTENVKKEEGRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFETAEAAARAYDEAALRFRGSKAKLNFPENVTLRQPQFTVSTSTDPFQLSGTNLYDHRMFLTSNTMASHHLQSSLPLPPATSSSLTSPPQNITSLSSLYSAQLPPWSASASGHSSSSSP* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1820 283 MobiDBLite consensus disorder prediction 84 105 - -
Gso4g1820 283 Pfam AP2 domain 135 184 IPR001471 GO:0003700|GO:0006355
Gso4g1820 283 Gene3D AP2/ERF domain 134 194 IPR036955 GO:0003700|GO:0006355
Gso4g1820 283 ProSiteProfiles AP2/ERF domain profile. 135 192 IPR001471 GO:0003700|GO:0006355
Gso4g1820 283 SMART rav1_2 135 198 IPR001471 GO:0003700|GO:0006355
Gso4g1820 283 PRINTS Ethylene responsive element binding protein signature 136 147 IPR001471 GO:0003700|GO:0006355
Gso4g1820 283 PRINTS Ethylene responsive element binding protein signature 158 174 IPR001471 GO:0003700|GO:0006355
Gso4g1820 283 CDD AP2 135 194 IPR001471 GO:0003700|GO:0006355
Gso4g1820 283 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 16 266 - -
Gso4g1820 283 PANTHER DNA-BINDING DOMAIN 16 266 IPR044808 GO:0003700|GO:0009873
Gso4g1820 283 SUPERFAMILY DNA-binding domain 135 193 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1820 Gso-Chr4 48437899 48439474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1820 133 197 AP2-EREBP Transcription Factor Family AT5G61890 87.692 2.22e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso4g1820 AP2 2e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1820 4 48437899 48439474 Gso6g1250 6 12194914 12197097 GST