Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1815 ATGGATTTGGACGATTTCCGATCCATATTGGACACAGCGGGCGTCGACGTGTGGATGTTCATCGACGCCGCAATCGCCGTTGCCTCCTCGGATTCCGCCGGAGATCTGAAGCGCCGCCGCGATGGCATCGTCGAGCGCCTCTACGCCGCCACGGCGGCTCCTCCGTGGTGCCGGAATTGCGACGAGGGCGGCCACCGCCTCAACGGCCACAGAATCAAGAAACAGAGTCGCCATAGTCCCAGCCCCGAACGGCAACCGCACCGCTCCACCGCCACAGCTTCCCCGGCAACGCCGCAGTCTCTCGACAACGGCGAAGACGAAGACAACGACGAGGATTTAGATCCTTATGGTGGCTTGTTGGACGACGAACAGAAGAAGATTCTGGAGATTAAAGAACAACTGGAGGAGCCTGATCAGTCTGAAGATTCTTTGGTGGAGCTGCTGCAAAGCCTCGCGGACATGGATATAACATTCCAAGGGTTAAAGGAGACTGACATCGGGAGGCACGTGAATCGGTTACGGAAGCATCCTTCAAACGACCTTCGGCGATTGGTGAAGTTGCTTGTCAGGAAGTGGAAGGAAATTGTGGATGAGTGGGTGAAGTTGAATCCACGGGGAGGAAGCAACACTCTGATGGCTGATGGAGACTCGTCGCCTGTGCAGAAAACCACTCAAAATGGGCATCATCAGCAGATTCCTGATTTTGCATACTCGCCCAATCCACACAATGGGAGCTCAGGGTCTGACCGTAACAACTCAGAAGCAGAACGCAAACCCAAAGTAGTTCCCCGCAGTGAACCTAGGCCAAAACACGCGCCATCACCGTCAGTTTCAACCCCTGCTTCCGCTACTCAAAACAGACAGAGGGAGAGCAGTTTTGACGCGGAGAGGCTTGCTTCGGCGAGAAGGAGGCTTCAAGAGAACTACAAAGAGGCTGAAATTGCCAAAAGGCAAAGAACGATTCAGGTGATGGACATCCATGACTTACCAAAGGCAAAACCCAAGAATAATGCCTTCTTTGGGAAGAACAAAGGTGGTGGTGGTGGTGGTTCTCAGGGAAGGCACTGGTGA 1071 0.5406 MDLDDFRSILDTAGVDVWMFIDAAIAVASSDSAGDLKRRRDGIVERLYAATAAPPWCRNCDEGGHRLNGHRIKKQSRHSPSPERQPHRSTATASPATPQSLDNGEDEDNDEDLDPYGGLLDDEQKKILEIKEQLEEPDQSEDSLVELLQSLADMDITFQGLKETDIGRHVNRLRKHPSNDLRRLVKLLVRKWKEIVDEWVKLNPRGGSNTLMADGDSSPVQKTTQNGHHQQIPDFAYSPNPHNGSSGSDRNNSEAERKPKVVPRSEPRPKHAPSPSVSTPASATQNRQRESSFDAERLASARRRLQENYKEAEIAKRQRTIQVMDIHDLPKAKPKNNAFFGKNKGGGGGGSQGRHW* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1815 356 Pfam TFIIS helical bundle-like domain 147 196 IPR017923 -
Gso4g1815 356 MobiDBLite consensus disorder prediction 67 119 - -
Gso4g1815 356 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 125 209 IPR035441 -
Gso4g1815 356 CDD TFIIS_I 124 197 - -
Gso4g1815 356 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 120 207 IPR035441 -
Gso4g1815 356 MobiDBLite consensus disorder prediction 275 289 - -
Gso4g1815 356 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 356 - -
Gso4g1815 356 MobiDBLite consensus disorder prediction 85 102 - -
Gso4g1815 356 MobiDBLite consensus disorder prediction 251 267 - -
Gso4g1815 356 MobiDBLite consensus disorder prediction 103 117 - -
Gso4g1815 356 MobiDBLite consensus disorder prediction 210 250 - -
Gso4g1815 356 MobiDBLite consensus disorder prediction 332 356 - -
Gso4g1815 356 MobiDBLite consensus disorder prediction 203 295 - -
Gso4g1815 356 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 356 IPR044790 -
Gso4g1815 356 SMART TFS2_5 127 198 IPR003617 GO:0005634
Gso4g1815 356 Coils Coil 295 322 - -
Gso4g1815 356 ProSiteProfiles TFIIS N-terminal domain profile. 122 199 IPR017923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1815 Gso-Chr4 48385895 48389105 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Gso4g1815 Med26 4.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1815 - - gmx:100790582 629.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1815 4 48385895 48389105 Gso6g1259 6 12272574 12275281 GST
Gso5g1599 5 39298695 39301516 Gso4g1815 4 48385895 48389105 PCT
Gso8g1224 8 11206050 11208824 Gso4g1815 4 48385895 48389105 PCT
Gso4g1815 4 48385895 48389105 Gso5g1599 5 39298695 39301516 PCT
Gso4g1815 4 48385895 48389105 Gso8g1224 8 11206050 11208824 PCT