Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1814 ATGAGGGCCCTTCTCCCGAATCACCTCTTGCATTTGTCACGTTCTCAAGCTCGCACGCTTCTGGTTCGGTTTCAAGCGTGCGAGCTGTCATCATCATCTTCTTCTCCTCCTCATAACTCCCGAGACGTGAGGGTTTCGGTGTGGTGGGATTTCAAGAGCTGCGCGGTGCCTGATGACATGGATGCTTCCAAGGTTGCGCCGGCAATCGCGCAGGCGGTGAGGGCCAACGGGATCAAAGGTCCAATTCACATCAACGCTTTCGGGGATGTTAGCTCCCTCTCCAAGCGCCAACTCCAGGCACTCGCTTCAACCGGCATTCAATTCACCCACTTTCCTCATGGTGCAATAAATTGTTTCAACATTCTGGTTGATATCATGTTTTGGGTATCACAAAATCCTCCACCTGCACATCTCTTCCTGATATCTAGTGATAGAGATTTTGACTGCTTACTACACCGGTTAAGAATGAATAATTACAATATTTTGCTTGCTGGCTCAAGGAATGCTCCTGGTTTTCTCTCCACCGCAGCAACTATAATGTGGCAATGGTATAAATTGCTTAAGGGAGAAAATCTAATGGGAAAACATGTCAACCATCCTCCTGATGGTCCATATGGTTCTTGGTATGGAAACTTTAGGGTGCCACTTGAAAACCCTTCCCCAGCTACCGAGCACTCTACATCTTTAGAAGATGTGGAGATCTATGAACCTTCCTTAGACTTAAAGTTGGGTGAAGTTCCAAAGTCAGTTGTACAGAAAGTTAAGCACATATTGACTTCACATTCAAAAGGGATCTCCATTACAGATCTTCATGCAGACTTGGCAAAATGTGATGTGCATTTGGATCAAAATTTATATGGATTTCAAAGCGTTTCATGCTTCCTATTATCAATCCCACACGTACAGCTCCAGCCTTTAGGGGATGGAAATTTTTGTGTATGTTTGGTCCCCTCAGGGTCCCCTGAACCTTTTGACAGCAGTGTTGTCCCATCAGCTTCATCTGTTGTTAAGAACGAGGAGAGGGGTTATGAAAATGAGACTCCCTCAATTTCCACAGTCCATGCAAGGAGTATGAATGATGATTCAACATCATTCCAACCAGTCCCTCCCCAAGTCAAAACCATTGGTGAATATGTGAATAGTAAATCATCCTTTCCTTCGTTGGTTGAAAGACATGAATTTCAGCCCCAAAATGAGTTGCAGAAATCTTCTCTGGCTAGTGAGAAGATTGTGGATGTGGCTAATGCACAACTACCTGAGATTCAACAGCCATCCAAGGAAATCAAGTTTTCCAAAACTAAGACAAGTTCCTTTAAATCTAGATCTAAAAAGTCATCTGACAATGACAATGTTAAGTTTGAGGATGCAAGTCATACAATTGTAGAAAAACATACCACTTCAGGGAATCACCATGCTAGAAATGATCACAAAACAATGGAAAACAATGGTGTTGCAAACTATGAATTGGGAAATTGTAAAGCAAAGAACAACTATGAGAGTCCAACTAGAAAGAAGGCTGATGAAGTTTGTTGCAGCCCATATTCTCCACCAGTTGATGACCTTCTGGTTGACAAAAGACTCAGTGGAATTGCTGAAACTTATAACAAAAGGCCAACATTCTTTAGCTGGACTAGAAGTTGGTGGTCATTCTGGAAAAGCAATGCAAAGTCTGATGATTTGGAAGCTCATCAGAACAAGGTGGCTAGTCAGTTGGAGGATCCTAAGGTATCTGAAGTGGACCAGACTGTCAGTCATTTTGAAGAACCCAAGTTATCAGAACTGGACCAGAATGTTATTTGTTCTGGAAAGGTTGAGTTGATTTCTAGTGGTTCCTTTTGGAAGGACTTGGAATCTTTTATTTTCTCGCCCGAAGGATCACTTCTTGTTTCCCAGTCAAAAAACAGGGAGGAAATGGCACATAAATTACAAAATGATGGACCCCTGGTTCTTAGATCTCTCTCTCAAAAAGATATCATTCAATTGGTGGAATTGTTAATAGCAGAGAGAAAGTTGTTGGTGGAGATCCCTTCCCATGGTTCAAAATCAAATGGCTTGAGATCTGTCTTTATGAGCAGAGCATCACAGTCAAAGTTGCCGAATTCATCTGAACATGATATGGAAAAACAAAATCAGAGTATTCCTCATACTAGAGTTTCCACAACTTCCACTGAAATGAAATATAATGAGAGGTCTAGAAATGATATATTAGAAGACTTGCAGCAACTTGTGAATGAGATATTGAGGGACCACCCAAAGGGATATAATATATGTTCTTTCCGAAGAATATTTCTTCTTAGGTATGGTTATTATCTTGATATAGAGAAGCTTGGTCATCAAAAGTTGTCATCCTTACTACAGGTAATGCCTGGAGTTAAATCAGAGTCCAATTATATTTTTCCATCTGTTCCTGCTGTTAGTGCTTCTGATGGGGAAACTTCTATCCTCAAAACTCAAATAACCAATGCTACTCATGCAGTCTTGAACTCAGATAATGAAATATCTGATTCAGCACTAAAAGATGATAAAATGGAATCTCTGTTGGAGGAATTAGGTTCTGTTTCTGTCATGAATTCCAATCAGAGTGATCTCGATTTAAAACTAGGTACAGTTCCACAATCAATTATAAGACAGATTAGGTGTATATTGAGATCACATCCAAAAGGAATCTCGATTACAGGTCTTCGTGAAGAGTTGAAAAAATCCAATGTGTGTTTCTATCAAAGCTTTTATGGATATAAAACATTTTCTCGCTTTCTATCATCAATACCACATGTACAGCTCCAGCCTTTAGGTCATGGTAAATTTTGTGTACATTTGGTTTCCTTAGAATCCCCTGAAACTTTTGAGAGCAATGATGTACAATCAATAACATCTGCTGCTAAGATTGATGAGAGCAATGCAAAGTCTGATGATTTGGCTGCTCATCAGAACAATGTGGTTAGTCACTTGGAGGATTCTATGTTATCTGAAGTGGACCAGATTGTTGGTGATTTAGAAGAAACCAAGTTATCAGAACTGGACCAGAATGTTATTTGTTCTGGAAAACCTGAGTTGTTTACTAGCAGTTCATTTTGGGATGACATGGAATCTTTTATTTTCACGCTCAAAGGATCACTTATTGTTTCCCAGTCAAAAAACAGGGAGGATATGGCACATAAATTACAAAAGGATGGACCTCTTGTTCTTAGATCTCTCACTCAAAAAGATATCCTTCAATTGGTGGAATTGTTAATATCAGAGAAAAAGTGGTTGGAGGAAAGCCTCTCCCAAACATTTCCTTTTAGGCTAATTCAACCTGTTCAGAAGAACTCATTGATGGGCCGATCTCATGGTGCAAATGGCTTGAGCTCTCTCTTTCTGAGCAGAGCAACACAGTCCAACTTACAAACATCATTTGAACATGATGTGGAGAAACACAATCAAAGTATTCCTCGTACTAGAGTTTCTGCAACTGCCACTGAGACGAAATATACAGAGAGGTCTAGAAATGATGTATTAGAGGATTGTCAGAAACTTGTAAGTGAGATATTGAGGGAGCACCCAGAGGGGTATAAGATCAGTTCTTATCCAAGATTGTTTGTTGATAGGTATGGCTATCATCTTGATTTTCAGAAACTTGGTTACCAAAAGTTGGCACCCTTGCTACAGATAATGCCAGAAGTTAAAGTAGAGTCCACTTATATTTTTCCTTCTGTTCCTGCTGTTAGTGCTTCTGATGGAGAATCTTTTATCCTCCAAACTCAAGTAAACAATGCCAGCCATGCTCATCATGCAGTCTTGAACCCAGATAGTGAATTATCTGATTCAGCCCTGGAAGATGATAACATGGAATCTCCATGGCAGAAATTAGGTTACAACCAGAGTAATATGGAGTCAAAATTAAGTCAGAAAGCTGAAGAACTTGATACACCAAAGCTTCCTGATTATGAACCCATAGTCTCAGATTATGACTCTTCTGAATCTGAAGGAGATTCTCAACCTGAAAAGCAAGGAAAACTAAAATGTAATAAGCATGACATTTCTCTTTGGCAAGCTCTGGATTTGTGGCACAACAAGAAGGAAGGAGAGAATAGTGTCAAAAAGCCAGACAATGTTGGCCACTTGAACAAGACTTTGGTGGCTGATATTTTAAATTCATCTGCCAAGTCTACCCGGGGTACCTAG 4164 0.4011 MRALLPNHLLHLSRSQARTLLVRFQACELSSSSSSPPHNSRDVRVSVWWDFKSCAVPDDMDASKVAPAIAQAVRANGIKGPIHINAFGDVSSLSKRQLQALASTGIQFTHFPHGAINCFNILVDIMFWVSQNPPPAHLFLISSDRDFDCLLHRLRMNNYNILLAGSRNAPGFLSTAATIMWQWYKLLKGENLMGKHVNHPPDGPYGSWYGNFRVPLENPSPATEHSTSLEDVEIYEPSLDLKLGEVPKSVVQKVKHILTSHSKGISITDLHADLAKCDVHLDQNLYGFQSVSCFLLSIPHVQLQPLGDGNFCVCLVPSGSPEPFDSSVVPSASSVVKNEERGYENETPSISTVHARSMNDDSTSFQPVPPQVKTIGEYVNSKSSFPSLVERHEFQPQNELQKSSLASEKIVDVANAQLPEIQQPSKEIKFSKTKTSSFKSRSKKSSDNDNVKFEDASHTIVEKHTTSGNHHARNDHKTMENNGVANYELGNCKAKNNYESPTRKKADEVCCSPYSPPVDDLLVDKRLSGIAETYNKRPTFFSWTRSWWSFWKSNAKSDDLEAHQNKVASQLEDPKVSEVDQTVSHFEEPKLSELDQNVICSGKVELISSGSFWKDLESFIFSPEGSLLVSQSKNREEMAHKLQNDGPLVLRSLSQKDIIQLVELLIAERKLLVEIPSHGSKSNGLRSVFMSRASQSKLPNSSEHDMEKQNQSIPHTRVSTTSTEMKYNERSRNDILEDLQQLVNEILRDHPKGYNICSFRRIFLLRYGYYLDIEKLGHQKLSSLLQVMPGVKSESNYIFPSVPAVSASDGETSILKTQITNATHAVLNSDNEISDSALKDDKMESLLEELGSVSVMNSNQSDLDLKLGTVPQSIIRQIRCILRSHPKGISITGLREELKKSNVCFYQSFYGYKTFSRFLSSIPHVQLQPLGHGKFCVHLVSLESPETFESNDVQSITSAAKIDESNAKSDDLAAHQNNVVSHLEDSMLSEVDQIVGDLEETKLSELDQNVICSGKPELFTSSSFWDDMESFIFTLKGSLIVSQSKNREDMAHKLQKDGPLVLRSLTQKDILQLVELLISEKKWLEESLSQTFPFRLIQPVQKNSLMGRSHGANGLSSLFLSRATQSNLQTSFEHDVEKHNQSIPRTRVSATATETKYTERSRNDVLEDCQKLVSEILREHPEGYKISSYPRLFVDRYGYHLDFQKLGYQKLAPLLQIMPEVKVESTYIFPSVPAVSASDGESFILQTQVNNASHAHHAVLNPDSELSDSALEDDNMESPWQKLGYNQSNMESKLSQKAEELDTPKLPDYEPIVSDYDSSESEGDSQPEKQGKLKCNKHDISLWQALDLWHNKKEGENSVKKPDNVGHLNKTLVADILNSSAKSTRGT* 1388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1814 1387 Gene3D - 869 945 IPR041966 -
Gso4g1814 1387 CDD LOTUS 876 934 - -
Gso4g1814 1387 ProSiteProfiles OST-type HTH domain profile. 246 317 IPR025605 -
Gso4g1814 1387 MobiDBLite consensus disorder prediction 424 451 - -
Gso4g1814 1387 Gene3D - 247 316 IPR041966 -
Gso4g1814 1387 MobiDBLite consensus disorder prediction 696 724 - -
Gso4g1814 1387 CDD LOTUS 1166 1223 - -
Gso4g1814 1387 Gene3D - 1160 1228 IPR041966 -
Gso4g1814 1387 Gene3D - 730 797 IPR041966 -
Gso4g1814 1387 ProSiteProfiles OST-type HTH domain profile. 870 941 IPR025605 -
Gso4g1814 1387 PANTHER EMB|CAB71880.1 11 860 - -
Gso4g1814 1387 PANTHER EMB|CAB71880.1 860 961 - -
Gso4g1814 1387 PANTHER EMB|CAB71880.1 956 1365 - -
Gso4g1814 1387 ProSiteProfiles OST-type HTH domain profile. 1165 1239 IPR025605 -
Gso4g1814 1387 CDD PIN_limkain_b1_N_like 44 164 - -
Gso4g1814 1387 CDD LOTUS 736 791 - -
Gso4g1814 1387 MobiDBLite consensus disorder prediction 1322 1336 - -
Gso4g1814 1387 Pfam NYN domain 44 174 IPR021139 GO:0004540
Gso4g1814 1387 ProSiteProfiles OST-type HTH domain profile. 735 809 IPR025605 -
Gso4g1814 1387 CDD LOTUS 247 315 - -
Gso4g1814 1387 MobiDBLite consensus disorder prediction 1295 1336 - -
Gso4g1814 1387 Pfam OST-HTH/LOTUS domain 1166 1225 IPR025605 -
Gso4g1814 1387 Pfam OST-HTH/LOTUS domain 873 935 IPR025605 -
Gso4g1814 1387 Pfam OST-HTH/LOTUS domain 736 791 IPR025605 -
Gso4g1814 1387 Pfam OST-HTH/LOTUS domain 248 310 IPR025605 -
Gso4g1814 1387 PANTHER LIMKAIN B LKAP 956 1365 IPR024768 GO:0005777|GO:0010468|GO:1903231
Gso4g1814 1387 PANTHER LIMKAIN B LKAP 860 961 IPR024768 GO:0005777|GO:0010468|GO:1903231
Gso4g1814 1387 PANTHER LIMKAIN B LKAP 11 860 IPR024768 GO:0005777|GO:0010468|GO:1903231
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1814 Gso-Chr4 48368626 48375222 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1814 43 189 C2H2 Transcription Factor Family AT5G61190 41.611 1.41e-29 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1814 - - gmx:102660946 2721.04