Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1812 ATGCTGGAAATCTCAACTTCACAGGAAACCCCGCTAGAGAACGCGGACGGCGGCTCCGCGGCGGTCTCGGACGGGTCGAAAGCCGAGCACGGCGAGGACGATGACCGGAATCCCGCCGCGAACCGGTGGCCGAGAGAGGAGACAATGGCTTTGCTCAATATAAGGTCCGAAATGGACGTTGCTTTCAAAGACGCAAACCTCAAAGCCCCTCTCTGGGAACAAGTCTCAAGGAAATTATCGGAGCTAGGTTATAATAGGAGTGCGAAGAAGTGCAAGGAGAAATTCGAGAACATTTACAAGTACCATAGGAGAACTAAAGAAGGTCGTTTTGGAAAATCAAACGGTGCAAAAACTTACCGATTTTTCGAGCAATTGGAAGCTTTAGACGGAAACCACTCACTTCTTCCTCCGACAACAACCGACAACAACAACAACAACAACGTTGGTGATGATGTTGTCCTGAACGCGGTTCCGTGTTCGGTTAGTGCGGCGGCGCACGAGCATTCGAGTTCGACGACGTCGTGTTCGGGGAAGAAGAAGAGGAAGCTGACGCAGTTTCTGGAGGGGTTGATGAGGGAAGTGATAGAGAAGCAAGAGACGCTGCAGAGGAAGTTCGTGGAAGTGTTGGACAAGTGTGAAAAAGATCGAATGGCGAGGGAGGAAGCGTGGAAGAAGGAGGAACTCGAAAGGATCAAGAAAGAACGCGAGCTTCTGGCTCAGGAAAGATCAATTGCTGCTGCCAAAGACGAAGCTGTTCTTGCTTTTCTTAGAAAGTTTGCAGAAGCAGAAGACACGGTGCAGTTACTCGAGAAAATTCAGGTTCAAAACGACAAACAGAAAAACATGAAACAAAATGGCGGTAATGACAATGCTAATGGAGGTGGTGGTGTCGCAGTTGTCACTGATATGGATAAACAAGAATGTGGAAATACTAATGTTCGTGTTAGTGTTGGGAATTTTGTGCACATGAGTAGTTCTCGTTGGCCGAAGGATGAAGTGGAGGCATTGATAAGGTTAAGGACTCAAATTGATGTGCAGGCACAATGGAATAGTAATAACAATAACAATAATGGGTCTAAAGGGCCTCTCTGGGAGGAGATATCTTCAGCTATGAAGAGCCTTGGTTATGATCGAAGTGCAAAGAGGTGTAAAGAGAAATGGGAGAACATAAACAAGTACTTCAAGAGGATAAAGGAGAAGAGCAAGAGGAAGCCTCAGGATTCCAAGACGTGTCCTTATTATCATCACCTTGAGGCTTTGTACAGTAAGAAGCCTAAGAAGGTGGATCTTGGGAACGAGTTGAAGCCTGAGGAGCTGTTGATGCATATCATGGTGAGTCAAAGTCAAGAACAGCAACAAGAGATGCAGACTCAGACTCAGTCACCATCTGAAGATGCTGAGAGAGATCAGAATCAGGGAGATAATGAAGATCAAAGTGAGTATCAGAATCAGATGGTTGATAATAATAGTCCTTCCATTGCAATTATGAGTTAA 1494 0.4598 MLEISTSQETPLENADGGSAAVSDGSKAEHGEDDDRNPAANRWPREETMALLNIRSEMDVAFKDANLKAPLWEQVSRKLSELGYNRSAKKCKEKFENIYKYHRRTKEGRFGKSNGAKTYRFFEQLEALDGNHSLLPPTTTDNNNNNNVGDDVVLNAVPCSVSAAAHEHSSSTTSCSGKKKRKLTQFLEGLMREVIEKQETLQRKFVEVLDKCEKDRMAREEAWKKEELERIKKERELLAQERSIAAAKDEAVLAFLRKFAEAEDTVQLLEKIQVQNDKQKNMKQNGGNDNANGGGGVAVVTDMDKQECGNTNVRVSVGNFVHMSSSRWPKDEVEALIRLRTQIDVQAQWNSNNNNNNGSKGPLWEEISSAMKSLGYDRSAKRCKEKWENINKYFKRIKEKSKRKPQDSKTCPYYHHLEALYSKKPKKVDLGNELKPEELLMHIMVSQSQEQQQEMQTQTQSPSEDAERDQNQGDNEDQSEYQNQMVDNNSPSIAIMS* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1812 497 ProSiteProfiles Myb-like domain profile. 35 99 IPR001005 -
Gso4g1812 497 MobiDBLite consensus disorder prediction 447 466 - -
Gso4g1812 497 Gene3D - 43 104 - -
Gso4g1812 497 Gene3D - 328 396 - -
Gso4g1812 497 CDD GT1 41 106 - -
Gso4g1812 497 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2-LIKE 1 495 - -
Gso4g1812 497 ProSiteProfiles Myb-like domain profile. 326 391 IPR001005 -
Gso4g1812 497 MobiDBLite consensus disorder prediction 26 42 - -
Gso4g1812 497 MobiDBLite consensus disorder prediction 447 497 - -
Gso4g1812 497 CDD GT1 326 398 - -
Gso4g1812 497 MobiDBLite consensus disorder prediction 476 497 - -
Gso4g1812 497 Coils Coil 228 250 - -
Gso4g1812 497 PANTHER - 1 495 - -
Gso4g1812 497 Pfam Myb/SANT-like DNA-binding domain 326 420 IPR044822 -
Gso4g1812 497 Pfam Myb/SANT-like DNA-binding domain 41 128 IPR044822 -
Gso4g1812 497 MobiDBLite consensus disorder prediction 1 44 - -
Gso4g1812 497 SMART sant 324 393 IPR001005 -
Gso4g1812 497 SMART sant 39 101 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1812 Gso-Chr4 48340516 48342940 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1812 176 457 Trihelix Transcription Factor Family AT1G76890 42.517 1.65e-64 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gso4g1812 Myb_DNA-bind_4 2.4e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1812 - - gmx:100137080 893.264
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1812 4 48340516 48342940 Gso6g1263 6 12313331 12315955 GST