Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1808 ATGTATTCTGCTGCTTCCACTTCCTTTACTTCACCACTTCTCCATGACCTTGAGAACTTCCACTACTCAAGAAGGTTACTCCTTCACTCCCCATATCTTAACCAATCAGAAAAGCCCCCAACAAGCAGCCATGATTCAACAGAAACATACCTTGGAGATGGCAATTTCGATGCAAATGTTGTCATGGTACTCTCAGTCCTACTATGTGCTCTCATATGCTCACTGGGGCTAAACTCCATCATAAGGTGTGCACTAAGGTGTTCAAATTTTGTTGTGAGTGACTCAGTGGCAACCAACAACAATAACCCTCCAGCAGCAGCAAGAGTGGCCAACACAGGAGTGAAGAAGAAAGCTCTCAAGACTTTCCCCACGGTGAGTTACTCAGCTGAGCTAAACTTGCCAAGTTTGGACTCAGAGTGTGTGATATGCTTATCAGAGTTCACAAGTGGTGACAAAGTGCGCATTTTGCCAAAGTGCAACCACCGGTTCCATGTACGCTGCATTGACAAATGGCTAAGTTCACACTCGTCATGCCCCAAATGCAGACAGTGCCTAATTGAGACTTGCCAGAAGATTGTTGGGTGCAGTACTCAACAAGCTAGCTCATCACAACAACAACAACAACAACAACATGTGTTAGCAGTGCCAGAAACCATTGTGACCATAGTAGCCCCACTTGAGCCAGAAGGTTTGGTGCGTAACTATAGGGAACTTAGCTAA 720 0.4542 MYSAASTSFTSPLLHDLENFHYSRRLLLHSPYLNQSEKPPTSSHDSTETYLGDGNFDANVVMVLSVLLCALICSLGLNSIIRCALRCSNFVVSDSVATNNNNPPAAARVANTGVKKKALKTFPTVSYSAELNLPSLDSECVICLSEFTSGDKVRILPKCNHRFHVRCIDKWLSSHSSCPKCRQCLIETCQKIVGCSTQQASSSQQQQQQQHVLAVPETIVTIVAPLEPEGLVRNYRELS* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1808 239 Pfam Ring finger domain 139 182 IPR001841 -
Gso4g1808 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 186 IPR013083 -
Gso4g1808 239 PANTHER RING-H2 FINGER PROTEIN ATL78 4 238 IPR044602 GO:0016567|GO:0016740
Gso4g1808 239 SUPERFAMILY RING/U-box 118 187 - -
Gso4g1808 239 SMART ring_2 140 181 IPR001841 -
Gso4g1808 239 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 238 - -
Gso4g1808 239 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Gso4g1808 239 CDD RING-H2_PA-TM-RING 139 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1808 Gso-Chr4 48309410 48310453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1808 25 186 C3H Transcription Factor Family AT3G10910 46.951 2.38e-43 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1808 K19040 - gmx:100787934 456.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1808 4 48309410 48310453 Gso6g1267 6 12357099 12358304 GST
Gso5g1608 5 39367774 39368881 Gso4g1808 4 48309410 48310453 PCT
Gso8g1230 8 11255954 11256909 Gso4g1808 4 48309410 48310453 PCT
Gso4g1808 4 48309410 48310453 Gso5g1608 5 39367774 39368881 PCT
Gso4g1808 4 48309410 48310453 Gso8g1230 8 11255954 11256909 PCT