Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso4g1801 | ATGGCTACTGCCACCTCCAATTCTTCGCCCTCGGCTCAGCGCCACGTCGGCTTCAGCCGCCGCACGCAGGCGCCGCGCCAGCTGGACGACGACTCGCCGCCGGTGAACAAGTACCGGCTGCTGTCGGAGATAATGGCGCGCGCGCCGTACGCGGTGCTGGAGAGAGAAACATACAGCGACCTCTTGTGCGACCAATGCGGCTCCGGCGAGCTGCCGGAGGAGCTGCTTCTCTGCGACAAATGCGATAAAGGCTTCCACATGAAATGCGTCAGGCCTATCGTCGTGAGGGTTCCGATTGGGTCGTGGCTTTGCCCTAACTGTCAGGGAGGGAAGAGAGTGCGGACTTTCTCTCAGAAGAAGATAATTGATTTCTTCGGGATTCGGAGGAGTTCTGATGATGCTAATGACAAGCGTTCTTCTCAGGATGCTAAGAAGCGTCGGAAACGTTCACGGCCTCTGGTATTACATAAGAAAAAGAGGAGATTGTTACCATTTGTTCCTACAAAAGATCCTGCCCAGAGATTGAAACAGATGGGTTCTCTTGCTTCTGCTTTAACAGCCTTAAATTTGGAATTCAGTGATCACCTCACATACTTGCCTGGAATGGCTCCTAGATCTGCAAATCAAGCCTCACTTGAAAATGGCGGCATGCAGACTCTTTCCAAGGAAGACATGGAGACCTTAGAAAAATGCATTGCTATGTCTAAAAGAGGCGAATTCCCTCCCTTTATGGTTGTTTATGATTCACGTGAAGGCTATACTGTTGAGGCTGATGACCTAATCAAGGACATGACAATTATTGCTGAATACACTGGCGATGTGGATTACCTTGACAAACGGGAACAGGATGACTGTGACAGTATCATGACCCTTCTTCTTGGAGCAGAAAGTTCTCAAAGTCTTGTTATTTGTGCTGATAAACGAGGAAACATTGCTCGCTTTATCAGTGGCATAAATAATCACACACAGGAAGGTAGGAAGAAGCAGAATTGTAAGTGTGTGAGATACAATGTTAATGGTGAATGCAGGGTCTTTTTGGTTGCTACTCGTGATATTTCTAAGGGAGAGAGGCTATACTATGATTATAATGGTCATGAGTATGAATACCCGACTCATCATTTTGTCTAA | 1128 | 0.477 | MATATSNSSPSAQRHVGFSRRTQAPRQLDDDSPPVNKYRLLSEIMARAPYAVLERETYSDLLCDQCGSGELPEELLLCDKCDKGFHMKCVRPIVVRVPIGSWLCPNCQGGKRVRTFSQKKIIDFFGIRRSSDDANDKRSSQDAKKRRKRSRPLVLHKKKRRLLPFVPTKDPAQRLKQMGSLASALTALNLEFSDHLTYLPGMAPRSANQASLENGGMQTLSKEDMETLEKCIAMSKRGEFPPFMVVYDSREGYTVEADDLIKDMTIIAEYTGDVDYLDKREQDDCDSIMTLLLGAESSQSLVICADKRGNIARFISGINNHTQEGRKKQNCKCVRYNVNGECRVFLVATRDISKGERLYYDYNGHEYEYPTHHFV* | 376 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso4g1801 | 375 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 20 | 121 | IPR013083 | - | |
| Gso4g1801 | 375 | Gene3D | SET domain | 146 | 375 | IPR046341 | - | |
| Gso4g1801 | 375 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Gso4g1801 | 375 | PANTHER | HISTONE ACETYLTRANSFERASE | 18 | 373 | - | - | |
| Gso4g1801 | 375 | SMART | set_7 | 242 | 369 | IPR001214 | GO:0005515 | |
| Gso4g1801 | 375 | ProSiteProfiles | SET domain profile. | 241 | 363 | IPR001214 | GO:0005515 | |
| Gso4g1801 | 375 | SUPERFAMILY | FYVE/PHD zinc finger | 50 | 113 | IPR011011 | - | |
| Gso4g1801 | 375 | SUPERFAMILY | SET domain | 235 | 367 | IPR046341 | - | |
| Gso4g1801 | 375 | ProSitePatterns | Zinc finger PHD-type signature. | 63 | 107 | IPR019786 | - | |
| Gso4g1801 | 375 | CDD | PHD_RSF1 | 62 | 107 | - | - | |
| Gso4g1801 | 375 | Pfam | PHD-finger | 63 | 108 | IPR019787 | - | |
| Gso4g1801 | 375 | Pfam | SET domain | 239 | 363 | IPR001214 | GO:0005515 | |
| Gso4g1801 | 375 | MobiDBLite | consensus disorder prediction | 131 | 153 | - | - | |
| Gso4g1801 | 375 | SMART | PHD_3 | 62 | 108 | IPR001965 | - | |
| Gso4g1801 | 375 | PANTHER | HISTONE-LYSINE N-METHYLTRANSFERASE ATXR5 | 18 | 373 | - | - | |
| Gso4g1801 | 375 | CDD | SET_ATXR5_6-like | 238 | 375 | - | - | |
| Gso4g1801 | 375 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
| Gso4g1801 | 375 | ProSiteProfiles | Zinc finger PHD-type profile. | 60 | 110 | IPR019787 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso4g1801 | Gso-Chr4 | 48227293 | 48231395 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gso4g1801 | 29 | 145 | C2H2 Transcription Factor Family | AT3G01460 | 32.000 | 3.57e-09 | 57.0 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | PHD | Gso4g1801 | SET | 1e-06 | No_clan |
Event-related genes