Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1798 ATGAGTGGAAGTGGCAAAAAGCGCTCTTCAAAGTGGGATTTGAGAGACGATCCTGATTTTTCACCTGATGATAGTCAGCAATTGCGGTCTGGGTGGTCCTCTGCAGGTGATAAATTAAAGCCTGGCATGGGATTTTCGTCCAAGGAACCTTTTTCTGGAGGCAGAGGTTCAAATAAGGACGATATTATGAATAAAGACTATAGAGTTTTGGATGCAACAATGGAATGGGATGAGGATGGAAGTTACAACAATGAAATGTCTCCTGGGTTGGAGGGATGGAAACATAATAAGAGACATAGTCAATCCCCCAAAAATGGTTGGAGCAGGAGTAGTCGAAGCAGGAGCCCTCCTCATGGTTTTAGGTGGGATTCAGGAGTCAATGACAGAAATAGAATGCGGGCTGGAGGATCGACACAACCATGTAGAGATTTTGCTGCTGGTAAATGCAGAAGAGGCAGCCACTGCCATTTTCTTCATGATAATCAAAATCATGAGGATAGTTGGGAAGATAAGTACAGGGAAGATGGAGCTCCCAGATATTCTGCTCCCCACGAGGGTAGAGACTATTCTCTTAAGAGTGGTAGATCTAATGAAGCCTGTATTAATTTTCCAAAAGGAAGGTGTAGAATGGGAGCATCATGCAAGTTTGTGCATCATAACAATTCTGATGGACACAGTAAAGTTTCTGTGGATGAATTAGCTAGAGAGAGGGAAATTGATAGAAGGCACAGAGACAGTTCTTTTGAGCAGGGTGGAGGGCATGGGCCAAACCGTAGTGGTGATACTCTTTGCAAATTTTTTGCTAATGGACATTGTCGTAATGGTAAATATTGTAGGTTTTCTCATGATAGGCAAGCATGTAGAAGCCCTAATAGAAGATCAAGAGATGATAGGTGGGCAAGCAATCCTGGAGGAGATTATAATATGCTGGATAGACCGAAATTGAGTGATTCAGTTAGTCCTAATAGAAGGCCAAGGGATGATAGGTGGGGTTCAGATGGTAACAGGGCTGATGCAGATAAAGTTTGGGACAGTCCAAAGCGGAATGATACAGTTGCTGTCTCTGATACAGCAAAGCTGGTTGAGGACAAAAGTGAAAATGTGGTTGCCGCAGAGCAAGGATTCACCCCTTTGGCTACGAGGGATGGATGGGGTCATAGTTTGGATAAGAGCAGAGTGCATGGTGAACAACCATTTTCAAGTGATAAGAAGGAAGCTGACAGTTGGATAACAGGAAATAATGCTGCCAACATGCATGGTTCCCAGTCAATAGGTACAGACATTTGGTTGGGTGATGATGCAAAAATGTCTCCTGATTGGGATTACAGGGTGAGATCTTCCAGCTGTATTGAAGAAAAGCATGAACAGAATAAGCATGGGATAACGCAGGGTTTTATGTATTTAGACACCTCTGAACATGACAGAATACAAATTGCTCCAGGACAAGGTTTTAATCAGAATGCAGTGAGTTTTAATTCTTTGCATTCTTCAAGCTGCCAAGCAGTTGGACAAAGTCAAGTAGCAGTTCCCATTCTACCTTCAAAGGGTGGAATTGTTGATGGTATGCTGAAACAGGAAGTCTCCACTGAGAAAAAGTACACTGCTGAACCAAATATCATGGATGCTGGCTTATCACAAGTTAGTTCAAGAAATCCTCCTCCAACCGCGAACGTGGTAGGCAAAGAACAGCTTGCTCAGCTTACCAATCTCTCAGCCTCGCTGGCTCATATCCTCGGGACAGGGCAACAGCTGCCACAACTTTATGCTGCTTTAAATTCTCATGATGCAAAGGACATATCCTCCCTAGCAAAAACTGAGGTGCCTGCTATGCCTGTTTCCAACACATTCATCAGGCCAGATCCTACTGTTGGACTCCTGAAGCAATATGATCCAATGTGTGACAGTGTTGAGCCAAAGAGTGCTGTTGCAAGTGGGGTACCCCCAGCCATTCCTCCAAGTCAAAAAGTTGCAGATGTAGTGGAAATTCCGTCACAGTCCAACACAGGAAGACAAAATTGTGGTGATTCTTCCAAGGCTGCTGGCTCAGAAGAACTTGTCAAGAGTGATCCTCTAATCCAGTTGCAGCCAGGTCAAAACACTGGGGTTAATAAGGAAATGTTACCTGAGGAAACTCTAAAATCTAAAGATGATCCTAAAAGTACCAAAGAGAGTGGTCCTTTTGAAAACATGGAGCAAACTGATGGTCCTGATGAGGCAAAGAAAATAAAGGGTATGAAGGGGAATCGTGCATTTAAATTTGCATTGGTTGAGTTTGTTAAGGAGCTTCTAAAACCAACATGGAAAGATGGTCAAATCACCAAAGAAGATTATAAAACAATTGTGAAGAAAGTTGTTGATAAAGTAACTGGTTCCATGCAGGGGGTCAATATTCCTCAGACACAGGAGAAAATTGATCACTATTTGTCATTTTCAAAACCAAAGCTTAACAAACTTGTACAGGCGTATGTGGAAAAGGTTCAGAAGGCTTAG 2490 0.4289 MSGSGKKRSSKWDLRDDPDFSPDDSQQLRSGWSSAGDKLKPGMGFSSKEPFSGGRGSNKDDIMNKDYRVLDATMEWDEDGSYNNEMSPGLEGWKHNKRHSQSPKNGWSRSSRSRSPPHGFRWDSGVNDRNRMRAGGSTQPCRDFAAGKCRRGSHCHFLHDNQNHEDSWEDKYREDGAPRYSAPHEGRDYSLKSGRSNEACINFPKGRCRMGASCKFVHHNNSDGHSKVSVDELAREREIDRRHRDSSFEQGGGHGPNRSGDTLCKFFANGHCRNGKYCRFSHDRQACRSPNRRSRDDRWASNPGGDYNMLDRPKLSDSVSPNRRPRDDRWGSDGNRADADKVWDSPKRNDTVAVSDTAKLVEDKSENVVAAEQGFTPLATRDGWGHSLDKSRVHGEQPFSSDKKEADSWITGNNAANMHGSQSIGTDIWLGDDAKMSPDWDYRVRSSSCIEEKHEQNKHGITQGFMYLDTSEHDRIQIAPGQGFNQNAVSFNSLHSSSCQAVGQSQVAVPILPSKGGIVDGMLKQEVSTEKKYTAEPNIMDAGLSQVSSRNPPPTANVVGKEQLAQLTNLSASLAHILGTGQQLPQLYAALNSHDAKDISSLAKTEVPAMPVSNTFIRPDPTVGLLKQYDPMCDSVEPKSAVASGVPPAIPPSQKVADVVEIPSQSNTGRQNCGDSSKAAGSEELVKSDPLIQLQPGQNTGVNKEMLPEETLKSKDDPKSTKESGPFENMEQTDGPDEAKKIKGMKGNRAFKFALVEFVKELLKPTWKDGQITKEDYKTIVKKVVDKVTGSMQGVNIPQTQEKIDHYLSFSKPKLNKLVQAYVEKVQKA* 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1798 829 MobiDBLite consensus disorder prediction 665 741 - -
Gso4g1798 829 ProSiteProfiles Zinc finger C3H1-type profile. 194 221 IPR000571 GO:0046872
Gso4g1798 829 MobiDBLite consensus disorder prediction 317 347 - -
Gso4g1798 829 MobiDBLite consensus disorder prediction 166 191 - -
Gso4g1798 829 MobiDBLite consensus disorder prediction 708 724 - -
Gso4g1798 829 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 827 - -
Gso4g1798 829 MobiDBLite consensus disorder prediction 8 23 - -
Gso4g1798 829 MobiDBLite consensus disorder prediction 103 117 - -
Gso4g1798 829 MobiDBLite consensus disorder prediction 75 141 - -
Gso4g1798 829 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 160 IPR000571 GO:0046872
Gso4g1798 829 Pfam RNA-binding, Nab2-type zinc finger 199 218 - -
Gso4g1798 829 MobiDBLite consensus disorder prediction 1 63 - -
Gso4g1798 829 ProSiteProfiles Zinc finger C3H1-type profile. 258 285 IPR000571 GO:0046872
Gso4g1798 829 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 1 827 - -
Gso4g1798 829 MobiDBLite consensus disorder prediction 287 349 - -
Gso4g1798 829 Pfam CCCH-type zinc finger 263 283 IPR041367 -
Gso4g1798 829 SMART c3hfinal6 135 161 IPR000571 GO:0046872
Gso4g1798 829 SMART c3hfinal6 195 220 IPR000571 GO:0046872
Gso4g1798 829 SMART c3hfinal6 258 284 IPR000571 GO:0046872
Gso4g1798 829 Gene3D - 253 308 - -
Gso4g1798 829 MobiDBLite consensus disorder prediction 239 259 - -
Gso4g1798 829 ProSiteProfiles Zinc finger C3H1-type profile. 135 162 IPR000571 GO:0046872
Gso4g1798 829 Gene3D - 131 234 - -
Gso4g1798 829 SUPERFAMILY CCCH zinc finger 260 283 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1798 Gso-Chr4 48196638 48206321 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso4g1798 zf-CCCH 3.9e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1798 - K22909 gmx:100783856 1676.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1798 4 48196638 48206321 Gso6g1278 6 12464034 12473347 GST