Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1790 ATGGCCAAACCAAAAATGCCAGGGTTTCGGTTTCAACCCACTGACGTTGAGCTGATTGAGTATTTTCTGAAGAGGAAGGTTCGGGGTAAGAAATTCCCTTCCGAAATAATTGCTGAACTTGACTTGTACAAGTTTGCTCCGTGGGACCTCCCAGATATGTCTTTGCTCAAGAATGGGGATTTGAATTGGTACTTCTTTTGCCCTCGGGGAAAGAAGTATTCGACTGGTGGGAGGTTGAATCGGGCCACGGAGGCTGGGTATTGGAAGACTACTGGGAAGGATAGAGCAATTGAACACAATAATAGAGTTGTGGGGATGATAAAAACACTGGTTTTTCACACTGGTAGAGCCCCTAAGGGAGATCGAACTGATTGGGTTATGCATGAATTTAGACTTGATGACAAGGTGCTGGCTGATGAAGGCGTATTGCAGGACTCCTATGTGATTTGTAGGGTGTACCAAAAGGAGGGTCCTGGTCCTAGGAATGGTGCACAATATGGTAAACCATATGAGGAGAAAGAGTGGGAAACAGATGAGGAAATTGATTCTGTACAATCTGCCCCTGTTGCTGCTGTTTGTGCACCTGTTCCTATACAACCTAGTGAAAGCCATATTTCCGTTGCTAATTACATCCATCCCTCTACGAGTGGATGTGCTGGATTGACCTCTGTATCATGTGTATCAGAATTGATGCCATCTTGCTCGACACATCCTTCAGCACCTAGCAATCCAGTTGGCACTGTATCATGTGTATCAGAATTGATTCCCTCTTGCTCGGAACCACATCATTTGCCATCAAACAATCAAGTTGGCTCTGTTTCATGTGTTTCAGAATTCATGCCCTCTTGCTCAGCACATCCTTCAGCACCAAACAGTCAAGTTGGCTCTGTTTCATGTGTTTCAGAATTCATGCCATCTTGCTCGGCACATCCTTCAGCACCAAACAGTCAAGTTGGCTCTGTGTCATCTGCATCAGAATTGATGCCCTCTTTCTCAGACCATCCTTCAGCACCAAACAATCAAGTTGGCTCTGTATCTTGTGTACCAGAATTGATGACCTCTTGCTCAGCACATCCTTCAGCTCCAAATAATCAAGTTGACAATGACATTCTATCTTTGCTTGATTGTTTCTTTGAAGATGATGACACATTGGCTGTGAAAGAAAACAACAGAATTGAGAACATTGATGATCCTGATCAGGCAAACAATGCCGATGGTGCACTGTGTTCAGATCCAAATGCTATTTTTGAGGAGTTAGGAGACCTTAACAGCTTGGTTGGATTGGGTGAAGGCAGTTTTTCCTGTGGCCAGAAAAATGAATATACTACAAGCGAAATGCTTTATACTGTTGATATATTCGGGTCTTGTGACCATGACTTCTTGGAGTTGCTTGACCTAGAGACACCGCAGCTCTGGCTGAATAAACATGGAAGTGGTAGCCAAGATAAGTAA 1452 0.4394 MAKPKMPGFRFQPTDVELIEYFLKRKVRGKKFPSEIIAELDLYKFAPWDLPDMSLLKNGDLNWYFFCPRGKKYSTGGRLNRATEAGYWKTTGKDRAIEHNNRVVGMIKTLVFHTGRAPKGDRTDWVMHEFRLDDKVLADEGVLQDSYVICRVYQKEGPGPRNGAQYGKPYEEKEWETDEEIDSVQSAPVAAVCAPVPIQPSESHISVANYIHPSTSGCAGLTSVSCVSELMPSCSTHPSAPSNPVGTVSCVSELIPSCSEPHHLPSNNQVGSVSCVSEFMPSCSAHPSAPNSQVGSVSCVSEFMPSCSAHPSAPNSQVGSVSSASELMPSFSDHPSAPNNQVGSVSCVPELMTSCSAHPSAPNNQVDNDILSLLDCFFEDDDTLAVKENNRIENIDDPDQANNADGALCSDPNAIFEELGDLNSLVGLGEGSFSCGQKNEYTTSEMLYTVDIFGSCDHDFLELLDLETPQLWLNKHGSGSQDK* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1790 483 ProSiteProfiles NAC domain profile. 5 155 IPR003441 GO:0003677|GO:0006355
Gso4g1790 483 PANTHER PLANT NAC DOMAIN PROTEIN 4 469 - -
Gso4g1790 483 Gene3D NAC domain 14 157 IPR036093 GO:0003677|GO:0006355
Gso4g1790 483 MobiDBLite consensus disorder prediction 314 338 - -
Gso4g1790 483 Pfam No apical meristem (NAM) protein 7 132 IPR003441 GO:0003677|GO:0006355
Gso4g1790 483 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 469 - -
Gso4g1790 483 SUPERFAMILY NAC domain 6 155 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1790 Gso-Chr4 48113653 48118040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1790 1 248 NAC Transcription Factor Family AT5G09330 51.938 1.91e-86 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso4g1790 NAM 8.7e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1790 - - gmx:100781170 978.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1790 4 48113653 48118040 Gso6g1285 6 12552963 12556504 GST