Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1787 ATGCCCACTTGGTGGGGTAAAAAGTCCAGCAAGACCAAGGACCAACAGCACCAACAACAACAAGACCACCCTCATGGCGCCGCCGCCACCACCACCCTCCTTCAGTTCAATTTTATCAAGCCCAAGCCCAACCCCAAGCCCAGTAAGAGCTTCGACGACGTCGTGAGAAACTCCCCTCGTGCCAGCCGCGATTTCGGTTCCTCCGCCGCCGCCGCCGCCGTCGACCAAGGTCTTCCCTTGCCTCGCCCCTCCGTCTTCTCCACCCAAAACTTCGCCATCGACCAAGGCCTTGTTTTTGGATCTGCCTCTGTTTCCGGCTCCAGCGTCAGCTCCAGTGGCTCCTACGATGATCACCCTCAGATTAATGCCTCCAGAGGGCAAGGTGACATGAAGTTCCTTGTGAGGTCTAAAAGCCCGGGTCCTGGGTCAAGAGGGCCCACCAGCCCAACATCACCTCTGCATCCAAAGTTGCTTGGTTTGAGTCTTGACTCCCCTACAGGCAGGCAAGAAGGTGAATGTCATCCATTGCCTCTTCCGCCAGGTTCTCCTACCAGTCCTTCTTCTTCTCTTCCCAGCATGAGAGCAAATGGAATGACGGAACACACTACCAGTAACCTTTCCAAGTGGAAGAAAGGAAAGCTTCTTGGTCGGGGAACATTTGGGCATGTTTACCTGGGATTCAATAGTGATAGTGGACAATTGAGTGCAATTAAAGAAGTCAGGGTTGTCTGTGATGACCAATCATCAAAGGAGTGCCTCAAACAACTTAATCAGGAGATCCATTTGCTCAGTCAGCTTTCACATCCAAACATCGTTCAATACTATGGGAGTGATTTGGGGGAAGAAACACTTTCCGTTTATTTGGAATATGTCTCTGGTGGTTCTATTCATAAATTACTTCAGGAATATGGGGCCTTCAAGGAGCCTGTTATTCAAAATTATACCAGGCAGATTGTCTCTGGACTTTCCTATCTTCATGGGAGAAATACAGTACATAGGGATATCAAAGGGGCTAACATACTAGTTGATCCTAATGGTGAAATCAAGCTGGCAGACTTTGGAATGGCTAAACATATAAATTCTTCTTCCTCCATGCTATCTTTCAAAGGGAGTCCATACTGGATGGCACCCGAGGTTGTAATGAATACAAATGGCTATAGTCTTCCTGTTGATATATGGAGCTTGGGATGCACAATTCTTGAAATGGCAACATCAAAGCCTCCTTGGAATCAGTATGAAGGGGTAGCTGCAATATTTAAAATTGGTAACAGCAGAGATATGCCTGAAATTCCTGATCATCTCTCAAGCGAGGCAAAGAAATTCATTCAGCTATGCTTACAAAGAGATCCATCAGCCCGCCCAACAGCCCAGATGTTACTAGAGCATCCCTTTATTCGAGATCAGTCATTAACAAAAGCTACAAATGTCAGAATAACCAGGGATGCTTTCCCCTGCATGTTTGATGGAAGTCGGACGCCTCCGCCAGTTTTAGATCATTCCAATAGAACAAGTTTAACTTCATTGGATGGAGATTATGCAACAAAGCCAGTTCCTGTAACTTCACGAGCAGAAAGGAGCCCAAGAGATAACACAAGAATGATCACATCTTTACCAGTATCTCCCTGTTCAAGTCCATTGCGACAGTACGAGCCAGCGCACAAGAGCTGTTTCCTTTCTCCTCCTCACCCAACTTACACTTTGATGGGGCAGAATACACTCCCCTCATATCCAGTGAGATCAAATGCCACGTTCACTCTTGACCCTTTTCAGGAAACTTCTTTTTACAAAGCCCACACGCCCGGTGGATCCCCAAGAAGACTCATTTGA 1827 0.4718 MPTWWGKKSSKTKDQQHQQQQDHPHGAAATTTLLQFNFIKPKPNPKPSKSFDDVVRNSPRASRDFGSSAAAAAVDQGLPLPRPSVFSTQNFAIDQGLVFGSASVSGSSVSSSGSYDDHPQINASRGQGDMKFLVRSKSPGPGSRGPTSPTSPLHPKLLGLSLDSPTGRQEGECHPLPLPPGSPTSPSSSLPSMRANGMTEHTTSNLSKWKKGKLLGRGTFGHVYLGFNSDSGQLSAIKEVRVVCDDQSSKECLKQLNQEIHLLSQLSHPNIVQYYGSDLGEETLSVYLEYVSGGSIHKLLQEYGAFKEPVIQNYTRQIVSGLSYLHGRNTVHRDIKGANILVDPNGEIKLADFGMAKHINSSSSMLSFKGSPYWMAPEVVMNTNGYSLPVDIWSLGCTILEMATSKPPWNQYEGVAAIFKIGNSRDMPEIPDHLSSEAKKFIQLCLQRDPSARPTAQMLLEHPFIRDQSLTKATNVRITRDAFPCMFDGSRTPPPVLDHSNRTSLTSLDGDYATKPVPVTSRAERSPRDNTRMITSLPVSPCSSPLRQYEPAHKSCFLSPPHPTYTLMGQNTLPSYPVRSNATFTLDPFQETSFYKAHTPGGSPRRLI* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1787 608 SMART serkin_6 209 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g1787 608 MobiDBLite consensus disorder prediction 496 510 - -
Gso4g1787 608 MobiDBLite consensus disorder prediction 187 205 - -
Gso4g1787 608 MobiDBLite consensus disorder prediction 103 205 - -
Gso4g1787 608 ProSitePatterns Protein kinases ATP-binding region signature. 215 238 IPR017441 GO:0005524
Gso4g1787 608 PANTHER MAP KINASE KINASE KINASE 1 591 - -
Gso4g1787 608 Pfam Protein kinase domain 210 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g1787 608 CDD STKc_MEKK1_plant 208 465 - -
Gso4g1787 608 MobiDBLite consensus disorder prediction 38 69 - -
Gso4g1787 608 MobiDBLite consensus disorder prediction 1 26 - -
Gso4g1787 608 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 591 - -
Gso4g1787 608 MobiDBLite consensus disorder prediction 494 527 - -
Gso4g1787 608 MobiDBLite consensus disorder prediction 103 121 - -
Gso4g1787 608 ProSiteProfiles Protein kinase domain profile. 209 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g1787 608 Gene3D Transferase(Phosphotransferase) domain 1 206 484 - -
Gso4g1787 608 SUPERFAMILY Protein kinase-like (PK-like) 206 545 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1787 Gso-Chr4 48067477 48073315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1787 1 528 MAP Kinase Kinase Kinase AT1G53570 57.401 0.0 543
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gso4g1787 Pkinase 3.3e-74 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1787 4 48067477 48073315 Gso6g1287 6 12589828 12595775 GST
Gso5g1630 5 39640326 39645908 Gso4g1787 4 48067477 48073315 PCT
Gso8g0133 8 1224723 1233234 Gso4g1787 4 48067477 48073315 PCT
Gso4g1787 4 48067477 48073315 Gso5g1630 5 39640326 39645908 PCT